Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9308g00007 ATGCGGATGAGCTGCAATGGATGTCGAGTTCTGAGAAAAGGTTGCAGTGAGAATTGCAGCATCAGACCCTGTTTACAGTGGATCAAAAGCCCAGAATCTCAGGCCAATGCTACTGTGTTTCTCGCTAAGTTCTACGGTCGTGCTGGGCTCATGAATCTCGTTAACGCCGGCCCAGAACATCTTCGTCCAGCGATCTTTCGTTCGTTGTTGTACGAGGCATGCGGTCGGATAGTGAACCCGATTTACGGTTCAGTTGGTTTGTTGTGGTCGGGGAGCTGGCAGCTGTGTCAGGCCGCCGTGGAGAACGTCTTGAAAGGCGCACCGATTACGCCGATCACGTCTGAAGCGGCGGCTAGTGGGCGGGGTCCACCCCTCAAGGCATACGACATACGCCACGTGTCAAGAGACGAGAACTCGGCCGCGTCGAACGAAACTCAGCAGCAACGAGTCAAGACTCGGTGTAGGGTCCGGCGTCCCGTCGCCAACGCCAAGCCCAAATCCACCACAAACGAAAACAACGGTGACAAGGGAACCGAATTGGGGTCTTCTGAACCGGGTTTGGTGACATGCGAGTGGACCGAAGAGGCGGTGAATCGGTCTGGAAGTCACGAATCGTCGCTGAGCCACCAGTCTGAGGCGGCGAATGCGGTGGAGAGCGAGAGCATGGTGTCGGTGGAGACGGCGGAGACTTCGATCCTCTTCCGAGATGAACCGGATTCAAACCCGAAGATCGTGCAACGAACCGATGATGTTGGTTTGGAGCTTACGCTTGGGTTCGAACCGGTTTCACGTGCGCAGCACGTGGTTCCAGTGAAGAAGAGACGGATCGAGTTGAAGGATTTTAGCGGCTCGGCTGAGAGTGGGTCGTGCAAGATGGAGCTGGGGCTTGAATGCTCGGCTTGA 903 0.5592 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVENVLKGAPITPITSEAAASGRGPPLKAYDIRHVSRDENSAASNETQQQRVKTRCRVRRPVANAKPKSTTNENNGDKGTELGSSEPGLVTCEWTEEAVNRSGSHESSLSHQSEAANAVESESMVSVETAETSILFRDEPDSNPKIVQRTDDVGLELTLGFEPVSRAQHVVPVKKRRIELKDFSGSAESGSCKMELGLECSA 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9308g00007 300 MobiDBLite consensus disorder prediction 195 222 - -
Vium9308g00007 300 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Vium9308g00007 300 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 257 - -
Vium9308g00007 300 MobiDBLite consensus disorder prediction 135 222 - -
Vium9308g00007 300 PIRSF AS2 1 300 IPR017414 -
Vium9308g00007 300 MobiDBLite consensus disorder prediction 163 179 - -
Vium9308g00007 300 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9308g00007 Vium-Chr9308 111792 113302 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9308g00007 1 296 AS2 family AT3G02550 57.047 3.87e-109 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium9308g00007 LOB 2.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9308g00007 - - gmx:100807854 535.413