Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9304g00001 ATGGAAGATCAAAATGGTTCCAGTGGCTTTGGCAAAGGGTTCCGCAAGGCTAAGCCTTACCTTGCTATGGTGTCCCTTCAGTTCGGTTACTCAGGAATGTACATCATCACCATGGTTTCTTTCAAGCATGGCATGAGCCATTGGGTTCTCTCAGTCTACCGTCATATAGTTGCCACTCTCATCATGGCCCCTTTTGCATTTTTTCTTGAAAGAAAAATACGACCAAAGATGACTCTCCCTGTGTTCCTGAGACTAGCGGTACTTGGCTTCGTTGAGCCAGTGCTTGATCAAAACTTGTACAACATGGGTATGAAGAACACCTCAACAACGTTTGCATCGGCCACAGTTAATGTTCTCCCAGCCATTACTTTTATAATGGCACTTATTTTCAGGTTAGAGACAGTGAATTTGAGAAAAATACACAGCATGGCCAAGGTAATTGGAACCGCAGTAACAGTGACAGGAGCCATGGTTATGACTTTGTACAAAGGGTCAGCCCTTCACTTTGTCAAGGGTCAAGCAACCCACCATGAAAGTGGCAGCACCACACAACCATCTGAACAAAACTGGGTGCTTGGCACAGTAATGCTCCTAGCAAGTTGTGGTGGTTGGGCTAGTTTCTTTATCTTGCAATCTTTCACTTTGAAGATGTACCCCGCAGAGCTCTCGGTGACAGCTTGGATTTGCTTTTTGGGCATTTTTGAGGGTTCAATTGCAAGCCTTATATTTGAACGTGACATGAGTGTGTGGTCCATAGGCATGGACTCAAGGCTTCTTGCTTGTGTTTATTCTGGTGTGGTGTGTTCTGGAATGGCATACTATGTACAAGGAGTTGTGACCAGGGAACGTGGACCTGTGTTTGTGACTTCTTTCAGTCCACTGTGTATGATTATCACTGCTGCATTGGGATCCATTGTCTTGGCTGAGCAAGTTTACATGGGAAGTGTAATTGGAGCTATTATCATTGTGACTGGACTTTATACAGTGGTATGGGGAAAAAGCAAAGACAGTGTGAACAAAACCGAGGCAGAGAAAACTGAAGGCCAAGAATTGCCAATTAAGGACAGTGCAGCATCAGAATCAGGCATTTTTGACAGCATTGAGATCAATGTTCCTTCTGGGCAAGGAAGGAATGTTCTTGCATCACCAAGAACATAA 1158 0.4439 MEDQNGSSGFGKGFRKAKPYLAMVSLQFGYSGMYIITMVSFKHGMSHWVLSVYRHIVATLIMAPFAFFLERKIRPKMTLPVFLRLAVLGFVEPVLDQNLYNMGMKNTSTTFASATVNVLPAITFIMALIFRLETVNLRKIHSMAKVIGTAVTVTGAMVMTLYKGSALHFVKGQATHHESGSTTQPSEQNWVLGTVMLLASCGGWASFFILQSFTLKMYPAELSVTAWICFLGIFEGSIASLIFERDMSVWSIGMDSRLLACVYSGVVCSGMAYYVQGVVTRERGPVFVTSFSPLCMIITAALGSIVLAEQVYMGSVIGAIIIVTGLYTVVWGKSKDSVNKTEAEKTEGQELPIKDSAASESGIFDSIEINVPSGQGRNVLASPRT 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9304g00001 385 PANTHER WAT1-RELATED PROTEIN 18 342 IPR030184 GO:0016020|GO:0022857
Vium9304g00001 385 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 161 - -
Vium9304g00001 385 SUPERFAMILY Multidrug resistance efflux transporter EmrE 247 334 - -
Vium9304g00001 385 Pfam EamA-like transporter family 193 330 IPR000620 GO:0016020
Vium9304g00001 385 Pfam EamA-like transporter family 31 150 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9304g00001 Vium-Chr9304 13993 18042 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9304g00001 11 370 Nodulin-like Gene Family AT4G08300 63.085 4.51e-167 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9304g00001 - - gmx:100814921 664.07