Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9303g00001 ATGGATCCAATCACAGCACATGGTCAATCCCTTCCCCCTCCTTTCCGCCCAAGAGATCTCCATCTGCACCACCAGCCGCAGCAGCACCAATTCCAAACCTTAAACCAAGCCACCGACGACGAGAACAGCGGAAGCAGCAGCGCGCAGAAAAGGGAACGCGAAGAGAACAACGGCAACAACAACGATGAAGGTGCTGGTGAGGCTGAGATAACAAGGAGACCTCGCGGGAGACCAGCCGGCTCCAAAAACAAACCCAAGCCACCCATTATCATCACTCGCGACAGCGCCAACGCCATGAAAACCCACATGATGGAGGTGGCAGACGGCTGCGACATCGTTGACAGCGTGTCTGAGTTCGCCAGGAAACGCCAGAGAGGGGTTTGCATCATGAGTGGGACTGGCACAGTCACCAACGTCACTCTCAGGCAACCGGCTTCTTCCGGTGCGGTTGTCACTCTCCATGGAAGGTTCGAGATTTTGTCCCTCAGTGGATCTTTCCTTCCGCCGCCTGCGCCACCGGCTGCTTCCGGTTTGACCATTTACTTGGCCGGTGGGCAGGGACAGGTGGTGGGAGGGAGTGTGGTTGGGACGCTGGTTGCTTCGGGGCCTGTGGTGATCATGGCTGCTTCGTTCAGCAACGCTGCTTACGAGAGGCTTCCTTTGGAGGATGAAGACCCTTCGCTGCAAATGCAAGGAGGCTCAATTGGGTCACCCGGTGCAAGTGGTATTGGTCAGTCACAGCTTCTAGGAGGAGGAGATGCAACTGCTCCACTTTTCCATGGTTTGTCTGCTAACCTTCTCAATTCTGTTCAAATGCCATCTGAGCCATTCTGGGCATCCAATCGCCCACCCTTCTAG 858 0.5583 MDPITAHGQSLPPPFRPRDLHLHHQPQQHQFQTLNQATDDENSGSSSAQKREREENNGNNNDEGAGEAEITRRPRGRPAGSKNKPKPPIIITRDSANAMKTHMMEVADGCDIVDSVSEFARKRQRGVCIMSGTGTVTNVTLRQPASSGAVVTLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLVASGPVVIMAASFSNAAYERLPLEDEDPSLQMQGGSIGSPGASGIGQSQLLGGGDATAPLFHGLSANLLNSVQMPSEPFWASNRPPF 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9303g00001 285 FunFam AT-hook motif nuclear-localized protein 99 226 - -
Vium9303g00001 285 MobiDBLite consensus disorder prediction 45 76 - -
Vium9303g00001 285 MobiDBLite consensus disorder prediction 26 44 - -
Vium9303g00001 285 Pfam Plants and Prokaryotes Conserved (PCC) domain 100 213 IPR005175 -
Vium9303g00001 285 ProSiteProfiles PPC domain profile profile. 96 232 IPR005175 -
Vium9303g00001 285 CDD DUF296 100 211 IPR005175 -
Vium9303g00001 285 MobiDBLite consensus disorder prediction 1 91 - -
Vium9303g00001 285 PIRSF ESCAROLA 16 285 IPR014476 GO:0003680
Vium9303g00001 285 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 40 235 IPR014476 GO:0003680
Vium9303g00001 285 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 228 - -
Vium9303g00001 285 Gene3D - 99 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9303g00001 Vium-Chr9303 2382 4397 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9303g00001 9 285 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 55.660 3.79e-83 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9303g00001 - - gmx:100807581 437.958