Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9301g00001 ATGGTTTATACTTCCATCCCAGCATATATTGATCCAGCCAACTGGCAGCAACAGCACCCAAATCATCAGCAGCAACCCAACAACACTGCTGTCAGCTCCCACCTTATTCTTCCACCACCAATACAACCGCCGCCGCCGCCTCCACCATCGCAACCCCATGGACTCGGTGGTAGTGCCACTGCCGGCTCCATCAGGCCCGGTTCCATGGCGGATAGAGCCAGGATGGCCAACATACCCATGCAGGAAGCTCAACAGAAGTGTCCAAGATGTGACTCCAGCAACACAAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCCCGCCACTTCTGCAAGGCTTGCAGAAGGTACTGGACTCGTGGCGGGGCCTTGAGGAACGTCCCTGTTGGTGGCGGCTGCCGGAGGAACAAGAGGAGCAGAGGAAGCTCCGGCAGCAGCGCCAGGTCGCCTGCGAACTCGGATCGCCAAACGGCGAGTGCCGGCTCCGCTTCCACAACCAGTGGCTCCTCTTCTGCTGACATGGTGGCAGGCCTTGGCGGTACCGGAGTGCCGTCGTCTCTTAGATTCATGGCTCCATTGCATCATCTTGGCGATCACCACCTCGGTGGTGGTGGTGGTGGTGGTGGTGGTGGAGGAGAGATAGGATTAAACTATGGTTTGAACTATGGGTCGATTTCAGGTCCAATGGGAGGAATAGGGGACTTGAATTTCCATATTGGAAACGCTTTGAATGGTGGTGGTGGTTCTGTGTTGTCTGGTTTGGACCAATGGAGGATGCCACAAACTCACCAATTTCCCTTCTTGTCTGGTTTGGAAGCTTCTTCATCACATGGGTTGTACCCATTTGATGGTGCTAGTGGTAGTGATGGCTATGGTGGCACTCCCATTAAGGTTTCGACTTCTGGGGTGATGTCTCAGTTTGCTTCTGTCAAAATGGAAGATAATCATCAGGAACTTGGTTTGCCTAGACAGTTCTTGGGAGTCAACAATAACCCTAATACAAATGATCAATATTGGAGTGGTGGTGCTGGTGCTGGTGCTGGTGCTACTTCTGCTTGGACTGATCTTTCTGCTTTCAGCTCTTCTTCCACTACTAGTAATCCCCTATAG 1113 0.5247 MVYTSIPAYIDPANWQQQHPNHQQQPNNTAVSSHLILPPPIQPPPPPPPSQPHGLGGSATAGSIRPGSMADRARMANIPMQEAQQKCPRCDSSNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRSRGSSGSSARSPANSDRQTASAGSASTTSGSSSADMVAGLGGTGVPSSLRFMAPLHHLGDHHLGGGGGGGGGGGEIGLNYGLNYGSISGPMGGIGDLNFHIGNALNGGGGSVLSGLDQWRMPQTHQFPFLSGLEASSSHGLYPFDGASGSDGYGGTPIKVSTSGVMSQFASVKMEDNHQELGLPRQFLGVNNNPNTNDQYWSGGAGAGAGATSAWTDLSAFSSSSTTSNPL 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9301g00001 370 MobiDBLite consensus disorder prediction 126 178 - -
Vium9301g00001 370 MobiDBLite consensus disorder prediction 37 53 - -
Vium9301g00001 370 ProSiteProfiles Zinc finger Dof-type profile. 85 139 IPR003851 GO:0003677|GO:0006355
Vium9301g00001 370 ProSitePatterns Zinc finger Dof-type signature. 87 123 IPR003851 GO:0003677|GO:0006355
Vium9301g00001 370 MobiDBLite consensus disorder prediction 17 66 - -
Vium9301g00001 370 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 58 165 IPR045174 GO:0003700|GO:0006355
Vium9301g00001 370 MobiDBLite consensus disorder prediction 139 175 - -
Vium9301g00001 370 Pfam Dof domain, zinc finger 84 139 IPR003851 GO:0003677|GO:0006355
Vium9301g00001 370 MobiDBLite consensus disorder prediction 17 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9301g00001 Vium-Chr9301 651 2242 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9301g00001 1 363 C2C2-Dof Transcription Factor Family AT2G37590 39.737 3.31e-61 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium9301g00001 zf-Dof 4.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9301g00001 - - gmx:100796820 526.554