Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium92g00001 ATGAAGTGGGGTGGAAAAAAACCTTCTCCTTCTCCTTCTTCCTCTTCTAGGCCTTCTTTTGCATCTCATGTGTCTCCTTTTTCATGGCTTTCCAAGTTCAAGCATATGAGAATAAACTCAGACCCAAAACCTGCCGCACTGAAGCAAAATGCAAAGCAGAATTCAACTCCATCAGATACCTCGCCCCATTATGCTTGTGGGAATAATAGAGGCAGGTTTTATGGAGGGGATGATGAGGCTTTCTGGAGACTCTCATTTGGTGAAGAGGGTAATGAGCATAGAAAAAGTGATGATATTCTGAAGCCGGTAAAGTACAAATTGGATGCTGAACATGTCATTCCATCCTCGAGTTTCCCCGGTGGATTGAATAATGCTAAAAGACAAGGTAGAAGAGAAGTCACTCAGAAGTTGAAGCAGAAGGACACTGAACTGAGAGAAGAAACAACATTGCTGAATGAAGCTGCAAGGAGTGTAAAAGAACTCGAATCCTTGAGGAGGCGATATGAGAGGAAAGCACAAAGAGTTTTGCAAGAGCAGCTCTTGAAATTGGAAAAGGCAGAAGAGGAATCTCAGTTTGCATCAAGTCCGTTCTTAGAAAATGATGTGCAGCAATATGAGTCACCCAGAACAATTTGCACACCAAGGAAGCATTTGTTTGTCGATTCAAAGAGTTCTGGCCTTGGGTATCTAAGAGAAGCCCGAGTAAGTAGTCCCCAATTGGATTCTGAGTTGCATAATTTGAAACAAACTGAGGAGTTGAAATTGAAAGCAAAGAGTAACCAACAAATGCAATCGCTTCATGTGAGCAGAGAAAACCAGAGGAGGAAACCAAAGCACAACTCCAAGAAGGATTTCAGAGATTCAATGATTGAGATGATCACAGAGAAACAGATCAGCCAGCCAGAAGAAATGCAAGATCTGCTAGCATGTTATCTGACTTTGAATTCTAATGAGTACCATGATCTCATCATCCAAGTGTTCAAACAAGAGAAGTTGCATCAAGATCTCAGCATTCTTTATATTAATAATAATGTTATATTAAATACTATCAGTAGGAGTTCTTTGTGCATGTAA 1074 0.406 MKWGGKKPSPSPSSSSRPSFASHVSPFSWLSKFKHMRINSDPKPAALKQNAKQNSTPSDTSPHYACGNNRGRFYGGDDEAFWRLSFGEEGNEHRKSDDILKPVKYKLDAEHVIPSSSFPGGLNNAKRQGRREVTQKLKQKDTELREETTLLNEAARSVKELESLRRRYERKAQRVLQEQLLKLEKAEEESQFASSPFLENDVQQYESPRTICTPRKHLFVDSKSSGLGYLREARVSSPQLDSELHNLKQTEELKLKAKSNQQMQSLHVSRENQRRKPKHNSKKDFRDSMIEMITEKQISQPEEMQDLLACYLTLNSNEYHDLIIQVFKQEKLHQDLSILYINNNVILNTISRSSLCM 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium92g00001 357 Coils Coil 144 189 - -
Vium92g00001 357 Pfam Transcriptional repressor, ovate 282 329 IPR006458 -
Vium92g00001 357 NCBIfam uncharacterized plant-specific domain TIGR01568 280 329 IPR006458 -
Vium92g00001 357 MobiDBLite consensus disorder prediction 256 286 - -
Vium92g00001 357 ProSiteProfiles OVATE domain profile. 274 333 IPR006458 -
Vium92g00001 357 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 153 329 IPR038933 GO:0045892
Vium92g00001 357 MobiDBLite consensus disorder prediction 1 23 - -
Vium92g00001 357 MobiDBLite consensus disorder prediction 40 70 - -
Vium92g00001 357 MobiDBLite consensus disorder prediction 46 65 - -
Vium92g00001 357 MobiDBLite consensus disorder prediction 8 23 - -
Vium92g00001 357 SUPERFAMILY C-terminal domain of PLC-beta 142 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium92g00001 Vium-Chr92 1490 2917 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vium92g00001 Ovate 1.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium92g00001 - - var:108325898 669.848