Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9299g00011 ATGCGGAAGGGAAGAGGAGGGGCGGCGTCGGTGGTCACGGCGGCGGCTGCCGCAGCCAACGGATCCCTTTTAAAGGAGCCTCGGTACCGGGGCGTGAGAAAGAGACCGTGGGGGAGGTTCGCGGCGGAGATCAGAGACCCGTTGAAGAAAGCCATTTGGTTGGGAACCTTCGTCGCCGAGGAAGCTGCTCGAGCCTACGACGCCGCCGCACGGACTCCGGGTCCCAAGGCCAAAACAAATTTCCCTCTTTCACACCCTTTCTGCTATCCGCACCCCACCACCAGTCCTCTCTTCTACGCGGGTTTCAACGACAACAACAACCACATCAGCAACCTTAACAACCCTCAGAGACCCACCTCAAGTGGCATGAGTAGCACCGTCGAGTCTTTCAGCGGGCCACGCCCTCCCACGGCCGCCGGCGCTTCCGCGACGCCGTTTTTGACCACCACGCGGAGATACCCGCGCACTCCCCCTCTCGTCCCCGAAGACTGCCACAGCGACTGCGACTCTTCCTCCTCTGTCGTCGACGACGGTGACAACATCGTCTCCTCGTCGTTCCGCCCTCCCCTGCCCTTCGATCTCAACGCGCCGCCGTTCGACGATGCCGCTGCCGATGACGATCTCCGCTGCACCGCGCTCTGCCTCTGA 648 0.6281 MRKGRGGAASVVTAAAAAANGSLLKEPRYRGVRKRPWGRFAAEIRDPLKKARXWLGTFDXAEEAARAYDAAARTLXGPKAKTNFPLSHPFCYPHPTTSPLFYAGFNDNNNHISNLNNPQRPTSSGMSSTVESFSGPRPPTAAGASATPFLTTTRRYPRTPPLVPEDCHSDCDSSSSVVDDGDNIVSSSFRPPLPFDLNAPPFDDAAADDDLRCTALCL 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9299g00011 218 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Vium9299g00011 218 CDD AP2 27 87 IPR001471 GO:0003700|GO:0006355
Vium9299g00011 218 MobiDBLite consensus disorder prediction 112 135 - -
Vium9299g00011 218 SUPERFAMILY DNA-binding domain 28 87 IPR016177 GO:0003677
Vium9299g00011 218 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 183 - -
Vium9299g00011 218 MobiDBLite consensus disorder prediction 112 175 - -
Vium9299g00011 218 FunFam Ethylene-responsive transcription factor 2 28 86 - -
Vium9299g00011 218 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Vium9299g00011 218 Pfam AP2 domain 27 77 IPR001471 GO:0003700|GO:0006355
Vium9299g00011 218 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Vium9299g00011 218 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Vium9299g00011 218 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9299g00011 Vium-Chr9299 63500 64696 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9299g00011 1 218 AP2-EREBP Transcription Factor Family AT1G50640 57.627 2.95e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium9299g00011 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9299g00011 K09286 - gmx:100803943 259.61