LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium9299g00003	ATGGATGCCCTCGATTTCTTCCCTCACAAGAGTAAAGAAACCCAAGATGATGATGATGAAGATGATGATAATGATAATGATAATGACATTCATCATCGTCAAACCCTCGACTTTCATGTAGATACCAGTTTGGATCTCCTTACCAAGAACACGGGTGGCAACAGATCAGTTGAAGAAAGTGATGCTTTGGAAACTATGGATGAAAAGAGGTTTGTAGCTTTGGTAACTGAATTGCATCAAGTGAATGCTGAAAATCAAAGATTAAGAGAGTTGATCGATCAGATGAACAATAACAGCAACGCCGTACGCATGCAACTTATCAAGATAACGCAGAAGCAGCATAACCTACGGAAGAATGGAGTGGATGGAGAGAAAGAAGAGATGGTTCCGAGGTCATTTTTAGACATTGGTGTGGCTGAAAAGGATGAGGCTTCGCAGCAACCCTCAGAGGAAAAACTCAGAGAGAGCAAAAGCGTGGTTGATTTGATGCATCGGTGTAAGGGTAATGAGAAAGATGTTGAAGATAAGTTGGATTGTGGAAGGGAAAGCTCAAAAGCTAGAATGGAAGGTGACCAAGAACTTTCTAACAAAGTTCCTAAATTGGATCAAAATTCAGAAACCTTGTCAATGATCAAGAAAGCCCGTGTGTCAGTTCGTGCAAGATCAGACTCCACAATGTGCTCACCCTTCTTCACATCCATTCATGTCCTTCACAGGACACCATTCCTCATGGATGCCCTCGATTTCTTCCCTCACAAGAGTAAAGAAACCCAAGATGATGATGATGAAGATGATGATAATGATAATGATAATGACATTCATCATCGTCAAACCCTCGACTTTCATGTAGATACCAGTTTGGATCTCCTTACCAAGAACACGGGTGGCAACAGATCAGTTGAAGAAAGTGATGCTTTGGAAACTATGGATGAAAAGAGGTTTGTAGCTTTGGTAACTGAATTGCATCAAGTGAATGCTGAAAATCAAAGATTAAGAGAGTTGATCGATCAGATGAACAATAACAGCAACGCCGTACGCATGCAACTTATCAAGATAACGCAGAAGCAGCATAACCTACGGAAGAATGGAGTGGATGGAGAGAAAGAAGAGATGGTTCCGAGGTCATTTTTAGACATTGGTGTGGCTGAAAAGGATGAGGCTTCGCAGCAACCCTCAGAGGAAAAACTCAGAGAGAGCAAAAGCGTGGTTGATTTGATGCATCGGTGTAAGGGTAATGAGAAAGATGTTGAAGATAAGTTGGATTGTGGAAGGGAAAGCTCAAAAGCTAGAATGGAAGGTGACCAAGAACTTTCTAAAAAAGTTCCTAAATTGGATCAAAATTCAGAAACCTTGTCAATGATCAAGAAAGCCCGTGTGTCAGTTCGAGCAAGATCAGACTCCACAATGATTGCAGATGGATGCCAATGGCGAAAGTATGGGCAGAAGATGGCAAAAGGGAATCCATGTCCAAGGGCCTATTATCGTTGCACAATGAGTACAGGCTGCCCAGTGCGTAAACAAGTACAAAGGTGTGCAGAAGATCGAAGTGTGTTGATCACTACATATGAAGGACAGCATAACCATCCACTTCCTCCCACAGCTCAGGCAATGGCCTCAACCACATCTGCAGCTGCTTCAATGCTTCTTTCTGGATCAATGCCAAGCTCAGATGGCCTAATCAATCCAACCATTTTGGAAAATGCTTCACTTCCATGCTCTCAAAACATGGCAACTCTCTCTGCCTCAGCTCCATTTCCCACCATCACTCTCGATCTCACTCAAAATCCTACCAATTCCTCACACCACCAAAGGGATCCACACAACCAACTTAGCCTCCTTTCTCCCCTTTTGGCTCAGAAGTTCATGTCAGTTCCAAAATTATTCGGACACTCACTGTGTGATCAAACTAAGCTTGCTGGCTTACATGAATCTCAGGGAATGGACGCTGCAGCTCCATCGTTTGCTAACTCACTGAATGCAGCAACTGCTGCTATCACTGCAGACCCCAATTTCACTGCTGCACTTGTGGCAGCCATAACATCTGTCATGGGAAGTTCACATTCAAACACCAGTGGTACCAGTAATACCACTGGCGATCACCACTGCAATAATAATGCATGA	2121	0.4319	MDALDFFPHKSKETQDDDDEDDDNDNDNDIHHRQTLDFHVDTSLDLLTKNTGGNRSVEESDALETMDEKRFVALVTELHQVNAENQRLRELIDQMNNNSNAVRMQLIKITQKQHNLRKNGVDGEKEEMVPRSFLDIGVAEKDEASQQPSEEKLRESKSVVDLMHRCKGNEKDVEDKLDCGRESSKARMEGDQELSNKVPKLDQNSETLSMIKKARVSVRARSDSTMCSPFFTSIHVLHRTPFLMDALDFFPHKSKETQDDDDEDDDNDNDNDIHHRQTLDFHVDTSLDLLTKNTGGNRSVEESDALETMDEKRFVALVTELHQVNAENQRLRELIDQMNNNSNAVRMQLIKITQKQHNLRKNGVDGEKEEMVPRSFLDIGVAEKDEASQQPSEEKLRESKSVVDLMHRCKGNEKDVEDKLDCGRESSKARMEGDQELSKKVPKLDQNSETLSMIKKARVSVRARSDSTMIADGCQWRKYGQKMAKGNPCPRAYYRCTMSTGCPVRKQVQRCAEDRSVLITTYEGQHNHPLPPTAQAMASTTSAAASMLLSGSMPSSDGLINPTILENASLPCSQNMATLSASAPFPTITLDLTQNPTNSSHHQRDPHNQLSLLSPLLAQKFMSVPKLFGHSLCDQTKLAGLHESQGMDAAAPSFANSLNAATAAITADPNFTAALVAAITSVMGSSHSNTSGTSNTTGDHHCNNNA	706

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium9299g00003	706	MobiDBLite	consensus disorder prediction	179	196	-	-
	Vium9299g00003	706	MobiDBLite	consensus disorder prediction	1	15	-	-
	Vium9299g00003	706	Coils	Coil	321	348	-	-
	Vium9299g00003	706	MobiDBLite	consensus disorder prediction	685	706	-	-
	Vium9299g00003	706	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	56	226	IPR044810	GO:0003700
	Vium9299g00003	706	SUPERFAMILY	WRKY DNA-binding domain	463	531	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vium9299g00003	706	SMART	WRKY_cls	470	530	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vium9299g00003	706	Pfam	WRKY DNA -binding domain	472	529	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vium9299g00003	706	MobiDBLite	consensus disorder prediction	1	31	-	-
	Vium9299g00003	706	Coils	Coil	78	105	-	-
	Vium9299g00003	706	ProSiteProfiles	WRKY domain profile.	465	531	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vium9299g00003	706	MobiDBLite	consensus disorder prediction	254	274	-	-
	Vium9299g00003	706	Gene3D	WRKY domain	455	532	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vium9299g00003	706	MobiDBLite	consensus disorder prediction	179	198	-	-
	Vium9299g00003	706	FunFam	probable WRKY transcription factor 31	455	532	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium9299g00003	Vium-Chr9299	6575	11297	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium9299g00003	247	692	WRKY Transcription Factor Family	AT1G62300	44.375	1.72e-100	317

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Vium9299g00003		WRKY	2.6e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium9299g00003	-		-	vum:124848283	1334.7