Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9299g00002 ATGGTTGAAGCCGTAACAATTGAAGAAAGGCCAAAGTCCAGAGATATTAGACGTTATTTCTGCCAGTACTGCGGTATCTGCAGATCCAAGAAAACCCTAATTACCTCTCACATCAATTCGCAACACAAGGAAGAGGATGAGAAGGCTAGAAAAGAAACAGATCCTGAAACGGAGTCTTCAAAATCCAACACCTGCGAGGAATGTGGTGTCACTTTCAAGAAACACGCATATTTGTTGCAGCACATGCAAAGTCACTCGCCTGAGAGGCCGTTTGTGTGTACTGTTGATGATTGTCATGCGAGTTACCGAAGGAAGGACCACCTGACTAGGCACCTTCTACTACATGAGGGGAAGACATTCAAGTGCCCTGTTGAGAACTGCAACATTGAGTTCTCTTTGCAAGGCAATATGAAAAGACACGTTGAGGAGATTCACGATGGCGGTTCCACTGCCGCCGCTGACAGAAGTCACAAACAACATGTGTGTCCAGAGATTGGGTGTGGAAAGGTTTTCAGATTTGCTTCAAAGCTAAAAAAGCATGAAGATTCTCATGTTAAGCTGGAATCAATAGAGGTGGTGTGCTTAGAACCAGGTTGCATGAAGCATTTTGCTAATGACCAGGGCCTTAGAGCTCATGTAAATACATCCCATCAATATATGACCTGTGACATTTGTGGGTCTAAGCAACTGAAGAAGAATATTAAGCGTCACCTTCGTTCACATGAAGCTGACAGCAGTTCCTCGAAGACCTTTCAATGCGAGTTTAAGGGTTGTAGCTGCACATTCTCTAAAAAATCTAATCTTGATAAGCATAAGAAGGCTGTGCACCTTGAAGAAAAACCTTTTCGGTGCGGGTTTCCTGATTGTGGCATGAGATTTGCTTACAAACATGTGCGGGATAATCACGAAAAAACTGCTAAACATGTTTTTACCCTCGGTGATTTTGAAGAAGCTGATGCAGAGTTCAGGTCAAGGCCGAGGGGAGGGAGGAAGAGAGAATGTCCTACTATTGAAATGTTAATCAGGAAGAGGGTTACCCCACCCAGTAGATTGGAGGATTGGTTATTTATGCAGGACAGAGAGTAG 1086 0.4383 MVEAVTIEERPKSRDIRRYFCQYCGICRSKKTLITSHINSQHKEEDEKARKETDPETESSKSNTCEECGVTFKKHAYLLQHMQSHSPERPFVCTVDDCHASYRRKDHLTRHLLLHEGKTFKCPVENCNIEFSLQGNMKRHVEEIHDGGSTAAADRSHKQHVCPEIGCGKVFRFASKLKKHEDSHVKLESIEVVCLEPGCMKHFANDQGLRAHVNTSHQYMTCDICGSKQLKKNIKRHLRSHEADSSSSKTFQCEFKGCSCTFSKKSNLDKHKKAVHLEEKPFRCGFPDCGMRFAYKHVRDNHEKTAKHVFTLGDFEEADAEFRSRPRGGRKRECPTIEMLIRKRVTPPSRLEDWLFMQDRE 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9299g00002 361 Gene3D Classic Zinc Finger 252 279 - -
Vium9299g00002 361 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Vium9299g00002 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 120 IPR013087 -
Vium9299g00002 361 Gene3D Classic Zinc Finger 156 242 - -
Vium9299g00002 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 150 IPR013087 -
Vium9299g00002 361 SUPERFAMILY beta-beta-alpha zinc fingers 118 146 IPR036236 -
Vium9299g00002 361 SUPERFAMILY beta-beta-alpha zinc fingers 235 286 IPR036236 -
Vium9299g00002 361 Gene3D Classic Zinc Finger 118 155 - -
Vium9299g00002 361 ProSitePatterns Zinc finger C2H2 type domain signature. 253 276 IPR013087 -
Vium9299g00002 361 SMART c2h2final6 91 115 IPR013087 -
Vium9299g00002 361 SMART c2h2final6 220 241 IPR013087 -
Vium9299g00002 361 SMART c2h2final6 63 85 IPR013087 -
Vium9299g00002 361 SMART c2h2final6 251 276 IPR013087 -
Vium9299g00002 361 SMART c2h2final6 19 42 IPR013087 -
Vium9299g00002 361 SMART c2h2final6 160 184 IPR013087 -
Vium9299g00002 361 SMART c2h2final6 282 308 IPR013087 -
Vium9299g00002 361 SMART c2h2final6 120 145 IPR013087 -
Vium9299g00002 361 SMART c2h2final6 192 217 IPR013087 -
Vium9299g00002 361 MobiDBLite consensus disorder prediction 38 61 - -
Vium9299g00002 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 251 281 IPR013087 -
Vium9299g00002 361 Gene3D Classic Zinc Finger 5 91 - -
Vium9299g00002 361 Gene3D Classic Zinc Finger 92 117 - -
Vium9299g00002 361 ProSitePatterns Zinc finger C2H2 type domain signature. 93 115 IPR013087 -
Vium9299g00002 361 PANTHER ZINC FINGER PROTEIN 8 348 - -
Vium9299g00002 361 ProSitePatterns Zinc finger C2H2 type domain signature. 284 308 IPR013087 -
Vium9299g00002 361 ProSitePatterns Zinc finger C2H2 type domain signature. 122 145 IPR013087 -
Vium9299g00002 361 SUPERFAMILY beta-beta-alpha zinc fingers 71 123 IPR036236 -
Vium9299g00002 361 Gene3D Classic Zinc Finger 280 305 - -
Vium9299g00002 361 Pfam Zinc finger, C2H2 type 160 184 IPR013087 -
Vium9299g00002 361 Pfam Zinc finger, C2H2 type 91 115 IPR013087 -
Vium9299g00002 361 Pfam Zinc finger, C2H2 type 64 85 IPR013087 -
Vium9299g00002 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
Vium9299g00002 361 ProSitePatterns Zinc finger C2H2 type domain signature. 194 217 IPR013087 -
Vium9299g00002 361 ProSitePatterns Zinc finger C2H2 type domain signature. 162 184 IPR013087 -
Vium9299g00002 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 189 IPR013087 -
Vium9299g00002 361 MobiDBLite consensus disorder prediction 38 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9299g00002 Vium-Chr9299 2125 4470 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9299g00002 88 311 C2H2 Transcription Factor Family AT1G72050 51.087 5.56e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium9299g00002 zf-C2H2 0.0013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9299g00002 K09191 - gmx:100801812 649.047