Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9299g00001 CAGAGGCCGTTTGTGTGTACTGTTGATGATTGTCATGCGAGTTACCGAAGGAAGGACCACCTGACTAGGCACCTTCTACTACATGAGGGGAAGACATTCAAGTGCCCTGTTGAGAACTGCAACATTGAGTTCTCTTTGCAAGGCAATATGAAAAGACACGTTGAGGAGATTCACGATGGCGGTTCCACTGCCGCCGCTGACAAAAGTCACAAACAACATGTGTGTCCAGAGATTGGATGTGGAAAGGTTTTCAGATTTGCTTCAAAGCTAAAAAAGCATGAAGATTCTCATGTTAAGCTGGAATCAATAGAGGTGGTGTGCTTAGAACCAGGTTGCATGAAGCATTTTGCTAATGACCAGGGCCTTAGAGCTCATGTAAATACATCCCATCAATATATGACCTGTGACATTTGTGGGTCTAAGCAACTGAAGAAGAATATTAAGCGTCACCTTCGTTCACATGAAGCTGACAGCAGTTCCTCGAAGACCTTTCAATGCGAGTTTAAGGGTTGTAGCTGCACATTCTCTAAAAAATCTAATCTTGATAAGCATAAGAAGGCTGTGCACCTTGAAGAAAAACCTTTTCGGTGAGGGTTTCCTGATTGTGGCATGAGATTTGCTTACAAACATGTGCGGGATAATCACGAAAAAACTGCTAAACATGTTTTTACCCTCGGTGATTTTGAAGAAGCTGATGCAGAGTTCAGGTCAAGGCCGAGGGGAGGGAGGAAGAGAGAATGTCCTACTATTGAAATGTTAATCAGGAAGAGGGTTACCCCACCCAGTAGATTGGAGGATTGGTTATTTATGCAGGACAGAGAGTAG 825 0.4364 QRPFVCTVDDCHASYRRKDHLTRHLLLHEGKTFKCPVENCNIEFSLQGNMKRHVEEIHDGGSTAAADKSHKQHVCPEIGCGKVFRFASKLKKHEDSHVKLESIEVVCLEPGCMKHFANDQGLRAHVNTSHQYMTCDICGSKQLKKNIKRHLRSHEADSSSSKTFQCEFKGCSCTFSKKSNLDKHKKAVHLEEKPFRXGFPDCGMRFAYKHVRDNHEKTAKHVFTLGDFEEADAEFRSRPRGGRKRECPTIEMLIRKRVTPPSRLEDWLFMQDRE 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9299g00001 274 Gene3D Classic Zinc Finger 1 28 - -
Vium9299g00001 274 ProSitePatterns Zinc finger C2H2 type domain signature. 107 130 IPR013087 -
Vium9299g00001 274 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Vium9299g00001 274 PANTHER ZINC FINGER PROTEIN 2 261 - -
Vium9299g00001 274 ProSitePatterns Zinc finger C2H2 type domain signature. 166 189 IPR013087 -
Vium9299g00001 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 63 IPR013087 -
Vium9299g00001 274 SMART c2h2final6 133 154 IPR013087 -
Vium9299g00001 274 SMART c2h2final6 105 130 IPR013087 -
Vium9299g00001 274 SMART c2h2final6 73 97 IPR013087 -
Vium9299g00001 274 SMART c2h2final6 164 189 IPR013087 -
Vium9299g00001 274 SMART c2h2final6 33 58 IPR013087 -
Vium9299g00001 274 SMART c2h2final6 4 28 IPR013087 -
Vium9299g00001 274 Gene3D Classic Zinc Finger 71 155 - -
Vium9299g00001 274 Gene3D Classic Zinc Finger 159 225 - -
Vium9299g00001 274 ProSitePatterns Zinc finger C2H2 type domain signature. 75 97 IPR013087 -
Vium9299g00001 274 SUPERFAMILY beta-beta-alpha zinc fingers 31 59 IPR036236 -
Vium9299g00001 274 Pfam Zinc finger, C2H2 type 73 97 IPR013087 -
Vium9299g00001 274 Pfam Zinc finger, C2H2 type 4 28 IPR013087 -
Vium9299g00001 274 SUPERFAMILY beta-beta-alpha zinc fingers 2 30 IPR036236 -
Vium9299g00001 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 33 IPR013087 -
Vium9299g00001 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 102 IPR013087 -
Vium9299g00001 274 ProSitePatterns Zinc finger C2H2 type domain signature. 35 58 IPR013087 -
Vium9299g00001 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 164 194 IPR013087 -
Vium9299g00001 274 Gene3D Classic Zinc Finger 29 70 - -
Vium9299g00001 274 SUPERFAMILY beta-beta-alpha zinc fingers 148 196 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9299g00001 Vium-Chr9299 6 1326 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9299g00001 1 224 C2H2 Transcription Factor Family AT1G72050 50.362 4.31e-89 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium9299g00001 zf-C2H2 0.00091 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9299g00001 K09191 - gmx:100800196 498.049