Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9296g00002 ATGACGGAACAGAGTGATGAATGCCAGAATGAATTTCGTGCTTCGCCTTCAAAACTGTTGCCTATCATTCAAACTCAGTCTTCTCCATCGCACAACTTCAATGATATGTCGGAAACAACCTCCCCCCTCAGCTGCCCTGTTCAAGATGTCGTCGAATCTCTTCCGATGTCGTCGTCGTCTCAAACATCACAACGTGACAACATGCGAGTTCAGTCCAAAAAATCGAAAAGGATAACTTGGACTACAGAAGAGCATAGACGGTTTCTAGAAGCACTCAGTAAATATGAGAAAGGAAACTGGAAACAAATTTCAGCATATATTCAAACAAAAAATGTAACTCAAGTAGCCAGTCATGCACAAAAGTATTTTATCCGTCAAGGTAGATCAGAAGAGCAAAAAAAGAGAAAAAGCATTCATGACATGGTTTTGGATACTAATATTGATAATGAGAATTCATCTTCTTCTAAAACAAATCCTGCAATTTCACAATTTTATGAGATACAACCATTGCAAATACAACCACAACAATCAATACCTCCTACACAGTATAACCAGAGACAACCACCGCAGGTGCAACCACTGCAAAGACAACCACTGCAATCTGTACATCATACACAGTTTAACCAAAGACAAACACCACAGGTGCAACCACTGCAATCAGTACATCATACACAGTTTAACAAGATTCGACGAACACATAGTGTAATGGAGGCGAATTCTTTCAACAAGAAAGCTCATCATCCTACACAGTTTGCCAAGATGCAACCAGTACATCCCATGGCAAGTGTGAATTCCAACAACATAGTTCATCAACCTGCACAGTTTAATCCACCAACAACGAACGTCTTCCTGCAGGTTAATCCCGTCAACACCATAATTCATCATCCCTCACAGTTTAATCAAATGCAACCGACAAGAGAAACAGTGTATACTAATGTTAAGAATTGGTCAAGAGGATGA 960 0.399 MTEQSDECQNEFRASPSKLLPIIQTQSSPSHNFNDMSETTSPLSCPVQDVVESLPMSSSSQTSQRDNMRVQSKKSKRITWTTEEHRRFLEALSKYEKGNWKQISAYIQTKNVTQVASHAQKYFIRQGRSEEQKKRKSIHDMVLDTNIDNENSSSSKTNPAISQFYEIQPLQIQPQQSIPPTQYNQRQPPQVQPLQRQPLQSVHHTQFNQRQTPQVQPLQSVHHTQFNKIRRTHSVMEANSFNKKAHHPTQFAKMQPVHPMASVNSNNIVHQPAQFNPPTTNVFLQVNPVNTIIHHPSQFNQMQPTRETVYTNVKNWSRG 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9296g00002 319 NCBIfam myb-like DNA-binding domain, SHAQKYF class 76 126 IPR006447 GO:0003677
Vium9296g00002 319 PANTHER TRANSCRIPTION FACTOR KUA1 30 253 - -
Vium9296g00002 319 SUPERFAMILY Homeodomain-like 73 127 IPR009057 -
Vium9296g00002 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 127 IPR017930 -
Vium9296g00002 319 MobiDBLite consensus disorder prediction 19 68 - -
Vium9296g00002 319 MobiDBLite consensus disorder prediction 1 76 - -
Vium9296g00002 319 MobiDBLite consensus disorder prediction 178 202 - -
Vium9296g00002 319 Pfam Myb-like DNA-binding domain 79 123 IPR001005 -
Vium9296g00002 319 Gene3D - 78 127 - -
Vium9296g00002 319 ProSiteProfiles SANT domain profile. 80 127 IPR017884 -
Vium9296g00002 319 CDD SANT 79 123 IPR001005 -
Vium9296g00002 319 ProSiteProfiles Myb-like domain profile. 72 123 IPR001005 -
Vium9296g00002 319 SMART sant 76 125 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9296g00002 Vium-Chr9296 8395 9452 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium9296g00002 Myb_DNA-binding 6.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9296g00002 - - vum:124848279 611.683