Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9294g00001 ATGGCAGCTACGATGGATTTGTACAACGGACAACCACAAGTTCAGTCGGATCCATTCAGAGGTGAGCTGATGGAAGTTCTAGAACCTTTTATGAAAAGTCCTTCCTCAACTCCCTCTTTATCTTCAGATTCAGCTTTACCTTCAACATCGACTTCTACTTCATATTCCTACTCTCCTTCCCCTCTCTCACTCCCTCCACACCCTAATTTCTACTCAGATCCTTCCTCCTCCTACCTATTCCAAACCCAGACCCTAATAGGCTTTGAACAGCAACCCGGTTCTGTTATCGGGCTCAACCACCTTAGCCCGTTTCAGGTTTCTCAGATCCAGGCGCAGATGCAGGCTCAGAGCCAGACCTCCCTCTCCCTCAACTTCCTGGGTCCGAAGCCCGTGGCAATGAAGCAAGTGGGTGGACCTCCGAAGCCCACCAAGCTGTACCGCGGGGTGAGGCAGAGGCATTGGGGAAAGTGGGTGGCGGAGATCAGACTCCCCAAAAACCGAACCAGGCTCTGGCTCGGAACCTTCGACACTGCCGAGGAAGCCGCTTTGGCGTACGACAAAGCCGCGTACAGACTCCGAGGCGACTTCGCCAGGCTCAACTTCCCGAACCTGAAGGGCTCTTGCCTCGGCGAGTACAAGCCTCTGCAGTCCGCGGTGGACGCTAAGCTCGACGCCATTTGTCAGAGCCTGGCCGAAATGCCGAAGCAGGGGAAGACGGAGAAGGGTGCCAGGGCATCATCCAAGAAGTCAAAAGCAGCTCGGAATCCGACCAAGGATCCCAACCCGAACCTTGTTTGCAAGGCCGAGCCCGAACTTGAACCCGAAGCCGAACCTGTTCTGTCTCCTGAAAGTGATGGTTCTGTGGATTCTTCTCCGCTATCAGATCTCACCTTTGATGTCAGCGAGCCGCAATGGGAAGATGCTTCTGCGTATTTTAACTTGCAGAAATTTCCTTCTTATGAGATCGATTGGGATTCTCTCTGA 984 0.5335 MAATMDLYNGQPQVQSDPFRGELMEVLEPFMKSPSSTPSLSSDSALPSTSTSTSYSYSPSPLSLPPHPNFYSDPSSSYLFQTQTLIGFEQQPGSVIGLNHLSPFQVSQIQAQMQAQSQTSLSLNFLGPKPVAMKQVGGPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYRLRGDFARLNFPNLKGSCLGEYKPLQSAVDAKLDAICQSLAEMPKQGKTEKGARASSKKSKAARNPTKDPNPNLVCKAEPELEPEAEPVLSPESDGSVDSSPLSDLTFDVSEPQWEDASAYFNLQKFPSYEIDWDSL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9294g00001 327 MobiDBLite consensus disorder prediction 237 255 - -
Vium9294g00001 327 FunFam Ethylene-responsive transcription factor 2 144 203 - -
Vium9294g00001 327 ProSiteProfiles AP2/ERF domain profile. 145 202 IPR001471 GO:0003700|GO:0006355
Vium9294g00001 327 MobiDBLite consensus disorder prediction 32 60 - -
Vium9294g00001 327 Gene3D AP2/ERF domain 145 203 IPR036955 GO:0003700|GO:0006355
Vium9294g00001 327 SMART rav1_2 145 208 IPR001471 GO:0003700|GO:0006355
Vium9294g00001 327 CDD AP2 144 204 IPR001471 GO:0003700|GO:0006355
Vium9294g00001 327 PRINTS Ethylene responsive element binding protein signature 168 184 IPR001471 GO:0003700|GO:0006355
Vium9294g00001 327 PRINTS Ethylene responsive element binding protein signature 146 157 IPR001471 GO:0003700|GO:0006355
Vium9294g00001 327 SUPERFAMILY DNA-binding domain 145 203 IPR016177 GO:0003677
Vium9294g00001 327 MobiDBLite consensus disorder prediction 284 298 - -
Vium9294g00001 327 MobiDBLite consensus disorder prediction 235 300 - -
Vium9294g00001 327 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 327 - -
Vium9294g00001 327 MobiDBLite consensus disorder prediction 1 60 - -
Vium9294g00001 327 Pfam AP2 domain 146 194 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9294g00001 Vium-Chr9294 6111 7941 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9294g00001 1 327 AP2-EREBP Transcription Factor Family AT1G78080 49.858 8.43e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium9294g00001 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9294g00001 K09286 - gmx:100802961 399.053