Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9291g00002 ATGGGGGATCACTTTGAATTACTGGTCGATCGATTGCTTACTGAATCCACATTAGAAGCTGCAATTGAAAGCAGGAATAAGTCTATGTTGGCTGCATCCTCAGCAGTGAATGACGCGAAAATTGATCTCAATTTGATGAAAGTGGGTCTGGATGATATAAAATTTCCCGGGAAGCTGGTAGAATGCAGGATATGTCATGATGACGATGAAGATACCAATATGGAGACACCCTGCTCTTGTTGTGGTAGTTTGAAGTACGCTCACCGTAGATGTATACAACGATGGTGTAATGAGAAGGGTGACACCACCTGTGAGATATGCCACCAGCAATTCAGGCCAGGCTATACTGCTCCTCCACCACTATTTCAGTTTGGACGTATTCCAATGAGTTTCAGGGGGAATTGGGAGATTTCAAGAAGAGACTTGAATAGTACACATTTGGTTAGCATGGTCCCCACTGATCAAAACGTTAACACTTCTAACTATGATCAGTATTCAGCCTCTGTTACAGGAAGTTTGATTTGCTGTCGTTCAATTGTTGTCATTTTCATGGTTATTCTGATTTTAAGACACACACTTCCCCTTGTAATTAGTGAAAATAAGGAGTATTCTTTCCCACTCTTTTTGCTGTTGTTGTTTCGGACTGTGGGAGTTGTTCTTCCAATATACTTCATGGTTAGAGCAGTGGCATTAATCCAGCGCCATCGGAGACAGCATCGAGAGCATCTTAATGCCTTGGCCATTTCATCTGACGATGAAAGCGAGCAAGCAGATTTGCAGCCTCAGCCTCAGCCTCATATCATACATGTACTGTAA 816 0.4252 MGDHFELLVDRLLTESTLEAAIESRNKSMLAASSAVNDAKIDLNLMKVGLDDIKFPGKLVECRICHDDDEDTNMETPCSCCGSLKYAHRRCIQRWCNEKGDTTCEICHQQFRPGYTAPPPLFQFGRIPMSFRGNWEISRRDLNSTHLVSMVPTDQNVNTSNYDQYSASVTGSLICCRSIVVIFMVILILRHTLPLVISENKEYSFPLFLLLLFRTVGVVLPIYFMVRAVALIQRHRRQHREHLNALAISSDDESEQADLQPQPQPHIIHVL 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9291g00002 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 116 IPR013083 -
Vium9291g00002 271 CDD RING_CH-C4HC3_MARCH 62 108 - -
Vium9291g00002 271 Pfam Protein of unknown function (DUF3675) 113 229 IPR022143 -
Vium9291g00002 271 ProSiteProfiles Zinc finger RING-CH-type profile. 54 114 IPR011016 GO:0008270
Vium9291g00002 271 SMART ringv_2 61 108 IPR011016 GO:0008270
Vium9291g00002 271 MobiDBLite consensus disorder prediction 251 271 - -
Vium9291g00002 271 SUPERFAMILY RING/U-box 61 112 - -
Vium9291g00002 271 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 239 IPR033275 -
Vium9291g00002 271 FunFam Zinc finger family protein 51 117 - -
Vium9291g00002 271 Pfam RING-variant domain 62 107 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9291g00002 Vium-Chr9291 6080 9217 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9291g00002 61 112 C3H Transcription Factor Family AT2G37950 45.455 1.73e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9291g00002 - - vun:114190540 541.191