Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9290g00004 ATGGGTGGAAATTCTCCTTGTGCCTCATGCAAACTGTTGAGACGCAGGTGCACGAAAGATTGCATCTTTGCTCCTTATTTTCCTTCTGAAGAACCTCAAAAGTTTGCCATAGTTCACAAAGTTTTTGGTGCTAGCAATGTTAGCAAAATGTTGCAGGAACTTCCAGTTCAGCAGAGAACAGATGCAGTGAGTAGTTTAGTGTATGAAGCAAGTGCAAGAGTGAGAGATCCTGTGTATGGTTGTGTTGGAGCCATATCTTATTTGCAAAATCAAGTTGCTGATCTTCAAATGCAACTTGCAGTTGCTCAAGCAGAGATACTCTGTCTTCAGATGGAAAATGAATCACTGATACCAATCTCAGAAACTGATCTACACCAGAAGTCTTATCTTCTTCAGAATAATTTCTCTCAGTTACTTGACTTTAACACTTCCAACAGTGTAGTTCAATATTCCCCTAATCATCTTACACAATGA 474 0.3945 MGGNSPCASCKLLRRRCTKDCIFAPYFPSEEPQKFAIVHKVFGASNVSKMLQELPVQQRTDAVSSLVYEASARVRDPVYGCVGAISYLQNQVADLQMQLAVAQAEILCLQMENESLIPISETDLHQKSYLLQNNFSQLLDFNTSNSVVQYSPNHLTQ 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9290g00004 157 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 126 - -
Vium9290g00004 157 Coils Coil 85 112 - -
Vium9290g00004 157 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Vium9290g00004 157 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9290g00004 Vium-Chr9290 47426 48454 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9290g00004 3 131 AS2 family AT2G30130 76.692 5.40e-71 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium9290g00004 LOB 1.2e-42 No_clan