Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9287g00001 ATGTCAAGTGGAGGAACATACTGGTGTTACACATGCAGGCAGCCAATCAGGATTGCTGGGAGGGATGCCATTTGCCCTTACTGCAATGAAGGCTTCTTGCAAGAACTTGATGACGTGCAAGGGGCAGTGGGGCAAAGAGGTTCTGAACCAAGAAATGGGTTCAGAGATGCTGTTGATAACTTCATGAGGCAGATAATGGGTGGAAGATACATAAACTTTGGCATTCGAATTGGGAGGTCTGGTTCTACCCAACTTCCTCAACGGACTTGGAGTGTGTTTATATTTCCTAGTCAAGAGTCTAGTGCTGATCTGGAAGAATTCTCTTATCAACACGTTACACATTACCAGTTTGGTGCGTCACAATCTTCAATTAATGCAGTGCCAACTATTAAGATCACGCGTGAACAGCTCAATTTTGATTCACTGTGTCCAGTTTGTATAGAAAGATTTGAAGTGGGTTCTGAGGCCAGGAAGATGCCATGTGACCACATTTACCACTCAGACTGTATTGTTCTATGGTTAGTTCGCCATAACTCGTGTCCTGTTTGCCGAAGAAAGCTGCTTCCTGAAAGACATTCTAGTTCTCGTGGTAGTCAAATTTGGGGAAGAAATCATGCCAGTGGTAATAGTGACAATGCTATCTCTAGGGGCAGGGAGAATAGACAGCTCAACAATGGATGGAGGAATCTACTATCATTTTTTACTTTTTGTACCCATTCTGTTCTTCTAATTCAGATACTCAATCGTTTATGTTGA 756 0.4286 MSSGGTYWCYTCRQPIRIAGRDAICPYCNEGFLQELDDVQGAVGQRGSEPRNGFRDAVDNFMRQIMGGRYINFGIRIGRSGSTQLPQRTWSVFIFPSQESSADLEEFSYQHVTHYQFGASQSSINAVPTIKITREQLNFDSLCPVCIERFEVGSEARKMPCDHIYHSDCIVLWLVRHNSCPVCRRKLLPERHSSSRGSQIWGRNHASGNSDNAISRGRENRQLNNGWRNLLSFFTFCTHSVLLIQILNRLC 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9287g00001 251 FunFam E3 ubiquitin-protein ligase RNF181 108 190 - -
Vium9287g00001 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 189 IPR013083 -
Vium9287g00001 251 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Vium9287g00001 251 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 101 187 - -
Vium9287g00001 251 MobiDBLite consensus disorder prediction 194 215 - -
Vium9287g00001 251 SMART ring_2 143 183 IPR001841 -
Vium9287g00001 251 ProSiteProfiles Zinc finger RING-type profile. 143 184 IPR001841 -
Vium9287g00001 251 Pfam Ring finger domain 143 184 IPR001841 -
Vium9287g00001 251 SUPERFAMILY RING/U-box 123 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9287g00001 Vium-Chr9287 1087 9838 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9287g00001 119 184 C3H Transcription Factor Family AT1G68180 54.545 1.24e-18 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9287g00001 K11982 - gmx:100815972 337.806