Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium927g00002 ATGGTGCAGGTGATTGAACGTAAAGGTCTTGACATTGTTCGTCGTGACTGGAGCTTATTAGCTAAAGAATTAGGAGATTATTGCTTGACTCAAATTTTGTCTGGAGGATCATGTGAAGATGTAGTGGAGTCAATCCACAACTCGCTCATGAAGGTACAAGAAGAAATGAGGAACGGACAAGTACCATTAGAGAAATATGTCACTACGAAGACATTGACTAAACCCCCTGAAGCTTATCCTGATGCCAAGAACCAGCCACATGTTCTTGTGGCACAAAGACTGAAGCAACAAGGTTACTCTTCTGGCTGTTCTGTTGGTGATACAATCCCGTATATAAATTGTTATGAACAGGGTGGCAGTTCAGGCAGTGCTGGTGGCATTGCTCAACGTGCTAGACATCCCGAAGAACTTAAAGGGGAACAAGGGACATGGCTGCTGATTGACATTGATTACTATTTATCACAACAGATCCATCCCGTAGTATCACGCCTTTGTGCATCAATTCAGGGAACAAGCCCAGAAAGACTGGCTGATTGCTCAGGGCTTGACTCCTCAAAGTTTCATCATAAATCATGTGAAGCTTTTAATGATGATTCTAGCAGTTTACTCTTGTCTGCTGCTAACGACGAGGAGAGGTATCGAGGATGTGAGCCATTGGTCTTGTCATGCCCCAGCTGCTCTGGTACATTTGACTGCCCACCCGTCTCTAAATCTATTTGCTGCTTGTTGGGAAGTGGAATGACAACCAGCGTATCCACCGAGGAATCTGACTTCAATTTCTGGCGTAAGCTGTGTTGTCCTAAATGCTCCGAAGATATCAAAATTTCTCCAGCGATGATAGCGAATCAGGTCAAAAGGCAAGCAGAGATGTTTGTTTTGATGTACTATAAAGGTTTACTAACGTGTGATGATGAAACGTGTAAGCATACAACGCGAAGTATCAGCATTCGGTTGGTTGGTGATTCCGAGAGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAATGGTCGTCTGCTTAGAAAGTACACTGAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCACGTGTTTGACACTGTTTCTTGTATAGAAAAGATGGAGGCCAAATCTAGAATAACTATAGAGAAAGAGGTGATAAAAATTAGGCCGATGATTGATCCGGCAGCTTCAACAGCGCAGAAGATCAGGGACCATTGTGCCTTTGGTTGGGTGAGACTGGAGGATCTGGTCGTATCAGTTTAA 1245 0.4378 MVQVIERKGLDIVRRDWSLLAKELGDYCLTQILSGGSCEDVVESIHNSLMKVQEEMRNGQVPLEKYVTTKTLTKPPEAYPDAKNQPHVLVAQRLKQQGYSSGCSVGDTIPYINCYEQGGSSGSAGGIAQRARHPEELKGEQGTWLLIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCSGLDSSKFHHKSCEAFNDDSSSLLLSAANDEERYRGCEPLVLSCPSCSGTFDCPPVSKSICCLLGSGMTTSVSTEESDFNFWRKLCCPKCSEDIKISPAMIANQVKRQAEMFVLMYYKGLLTCDDETCKHTTRSISIRLVGDSERGTVCPNYPRCNGRLLRKYTEADLYKQLSYFCHVFDTVSCIEKMEAKSRITIEKEVIKIRPMIDPAASTAQKIRDHCAFGWVRLEDLVVSV 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium927g00002 414 Pfam DNA Polymerase alpha zinc finger 206 410 IPR015088 GO:0003887|GO:0006260
Vium927g00002 414 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 3 413 - -
Vium927g00002 414 Gene3D DNA Polymerase alpha, zinc finger 206 399 IPR038256 -
Vium927g00002 414 Gene3D - 10 197 IPR042087 -
Vium927g00002 414 FunFam DNA polymerase 206 400 - -
Vium927g00002 414 FunFam DNA polymerase 10 197 - -
Vium927g00002 414 Pfam DNA polymerase family B 5 167 IPR006134 GO:0000166|GO:0003677
Vium927g00002 414 SUPERFAMILY DNA/RNA polymerases 5 183 IPR043502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium927g00002 Vium-Chr927 2310 5687 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium927g00002 5 412 Core DNA Replication Machinery Family AT5G67100 63.835 0.0 554
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium927g00002 K02320 - vum:124824102 835.099