Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9267g00004 ATGATTTGGGGTTGGGTTCGGTGGCTTCTGATCGGAATTCTGAATCGGATAGTTGTGAGGAATGGTTGGAGAGGGAGGATGCTGTCACGTATTCGAGGGACTTTTCTAAAGAGCCTGTTTTTGTTTCTGGAGCTGACCAGGAGTGGAAGTCGTGTTCGGTTGGATGTAAATTTGGGTTTAGTGGGGATAAGAAGCCAGATGCCGCATTTGGGTTACCTCAACCAAGTGGAACAGCTAGCGTTCTGCGATCAATGGAATCAGCAGAATACTATGCTGAGAACAATATTGCCATGGCAAGACGGTGGAAGGGGATATAACATTGTAATGACAACCAGTCTATCTTCGGATGTTCCTGTTGGATATTTTTCATGGGCTGAGTATGATATGATGGCCCCAGTGCAGCCGAAAACTGAAGCTGCTCTTGCAGCTGCTTTCATTTCCAATTGTGGTGCTCGAAATTTCCGGTTGCAAGCTCTTGAGGCCCTTGAAAAATCAAACATCAAGATTGATTCTTATGGTGGTTGTCACAGGAACCGTGATGGAAGAGTGAACAAAGTGGAAGCCCTGAAGCACTACAAATTTAGCTTAGCGTTTGAAAATTCGAATGAGGAAGATTATGTAACTGAAAAATTCTTCCAATCCCTTGTTGCTGGAACTGTCCCTGTGGTTGTTGGTGCTCCAAATATTCAGGACTTTGCTCCTTCTCCTGGTTCAATTTTACATATTAAAGAGATAGAGGATGTTGAGTCTGTTGCAAAGACCATGAGATATCTAGCAGAAAATCCCGAAGCATATAATCAATCATTGAGGTGGAAGTATGAGGGCCCATCTGATTCCTTCAAGGCCCTTGTGGATATGGCAGCTGTGCATTCATCGTGCCGCCTTTGCATTCACTTGGCCACAGTGAGTAGAGAGAAGGAAGAAAATAATCCAAGCTTTAAGAGACGTCCTTGCAAGTGCACTAGAGGGCCAGAAACTGTATATCATATCTATGTCAGAGAAAGGGGAAGGTTTGAGATGGAGTCCGTTTACCTGAGGTCTAGCAATTTAACTCTGAATGCTGTGAAGGCTGCTGTTGTTTTGAAGTTCACATCCCTGAATCTTGTGCCTGTATGGAAGACTGAAAGGCCTGAAGTTATAAGAGGGGGGAGTGATTTAAAACTCTACAAAATATACCCAGTTGGCTTGACACAGAGACAAGCTCTTTATACCTTCAGCTTCAAAGGTGATGCTGATTTCAGGAGTCACTTAGAGAACAATCCTTGTGCCAAGTTTGAAGTCATTTTTGTGTAG 1293 0.437 MIWGWVRWLLIGILNRIVVRNGWRGRMLSRIRGTFLKSLFLFLELTRSGSRVRLDVNLGLVGIRSQMPHLGYLNQVEQLAFCDQWNQQNTMLRTILPWQDGGRGYNIVMTTSLSSDVPVGYFSWAEYDMMAPVQPKTEAALAAAFISNCGARNFRLQALEALEKSNIKIDSYGGCHRNRDGRVNKVEALKHYKFSLAFENSNEEDYVTEKFFQSLVAGTVPVVVGAPNIQDFAPSPGSILHIKEIEDVESVAKTMRYLAENPEAYNQSLRWKYEGPSDSFKALVDMAAVHSSCRLCIHLATVSREKEENNPSFKRRPCKCTRGPETVYHIYVRERGRFEMESVYLRSSNLTLNAVKAAVVLKFTSLNLVPVWKTERPEVIRGGSDLKLYKIYPVGLTQRQALYTFSFKGDADFRSHLENNPCAKFEVIFV 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9267g00004 430 Gene3D - 103 280 IPR038577 -
Vium9267g00004 430 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 101 304 - -
Vium9267g00004 430 FunFam Glycoprotein 3-alpha-L-fucosyltransferase A 89 279 - -
Vium9267g00004 430 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 102 379 IPR001503 GO:0006486|GO:0008417|GO:0016020
Vium9267g00004 430 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 140 306 IPR001503 GO:0006486|GO:0008417|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9267g00004 Vium-Chr9267 44627 51149 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9267g00004 84 430 Xyloglucan Fucosyltransferase1 AT3G19280 72.334 0.0 547
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9267g00004 K00753 - gmx:100776065 620.542