Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9258g00002 ATGGCAATTACGTTGGGTGAAGGAGCTTCTTCATCTTCTGGTTTTGACCGTGGATGGACTTATGATGTGTTCTTGAGTTTCAGAGGTGAAGATACAAGGAGAAGCTTTACAGGATTTCTGTATCATGGTTTGTGCCAAAGGGGTATCAATGTTTTCATTGATGATGAGAAGCTCAGGAGAGGGGAAGACTTATCCCCTGCTCTTCTTGGAGTCATTCAAGAGTCTAGAATTGCCATCATTGTCTTCTCTCAAAACTATGCATTCTCCACATGGTGTCTTGATGAACTTGCAAAGATCATTGACTGTTACAAAACCAGAGGGCAACTTGTGTGGCCAGTTTTCTTCCATGTCGACCCTTCTGTGGTGCGCCATCAGAGAGGAACTTTTCAAACAGCAATGGCCCAACATGAAGTCAGATTCATGGGTAATGTCCAAAAGCTGCAGAAGTGGAAGAAATCCTTGTTTGAAGCATCCAATTTCTCAGGTTGGACCTTAGAAAACGGGTATGAATTTCAGATAATCCAAGATATCGTTGAGGAGGCCTCTAGAAAGTTAAGCCACACCATTTTGCACATTGCTGAATACCCAGTTGGAATAGAGACTCGTATATCAGAAGTGATGCCTCTTTTGCAGATTGNACGAATTAAATCAATAAGCTTCCCTTACCTGGATCAAAACGAACGTCTAGAGTTGAGAGACTTACCGGTTTCAGAACCTGGATCTATTCGGTTCAGACTGAAGCTCACAACTCAGGGAGTGCTCCTATGGTTTCTGAAACAAACTCTGCTTCTAATGGCAATTACGTTGGGTGAAGGAGCTTCTTCATCTTCTGGTTTTGACCGTGGATGGACTTATGATGTGTTCTTGAGTTTCAGAGGTGAAGATACAAGGAGAAGCTTTACAGGATTTCTGTATCATGGTTTGTGCCAAAGGGGTATCAATGTTTTCATTGATGATGAGAAGCTCAGGAGAGGGGAAGACTTATCCCCTGCTCTTCTTGGAGCCATTCAAGAGTCTAGAATTGCCATCATTGTCTTCTCTCAAAACTATGCATTCTCCACATGGTGTCTTGATGAACTTGCAAAGATCATTGACTGTTACAAAACCAGAGGGCAACTTGTGTGGCCAGTTTTCTTCCATGTCGACCCTTCTGTGGTGCGCCATCAGAGAGGAACTTTTCAAACAGCAATGGCCCAACATGAAGTCAGATTCATGGGTAATGTCCAAAAGCTGCAGAAGTGGAAGAAAGCCTTGTTTGAAGCATCCAATTTCTCAGGTTGGACCTTAGAAAACGGGTATGAATTTCAGATAATCCAAGATATCGTTGAGGAGGCCTCTAGAAAGTTAAGCCACACCATTTTGCACATTGCTGAATACCCAGTTGGAATAGAGACTCGTATATCAGAAGTGATGCCTCTTTTGCAGATTGAACCGGGTGAAGATATTCGTGTCATTGGGATCTATGGACTTGGAGGCATAGGTAAGACAACAATTGCAAGGGCATTGTACAACATGATTGCAGGCCAGTTTGAAGCTACAAGTTTCCTTGCTGACATAAGAGAAAGTTCAAGTCAAAGACAAGGGCTAGTGCAGCTTCAAGAATCACTTCTTTTTGATACTGTTGGGGACAAGAACATCAAGCTGGGAAGCATTTACAAAGGAATCCCTATTATCAAGAAAAGGCTTTGTTGCAAAAAAGTACTTTTGATCATTGATGATGTTGACAGGTTGGAGCAGCTTCAAGCACTGGCAGGAGGACGCGATTGGTTTGGTTTTGGAAGTGTGATCATCATAACAACAAGAGATAAGCACTTGCTGAGTGCTCATCAGGTTGACAAAACCTATGAGGTAAAGAAATTAAACTATGGTGAAGCTTTTGAGCTGTTCACTTGGAGTGCTTTCAAAAGGAAGACACCTGATGCAGGCTATTTGGAGGTTTCTAACCATGTGGTTCTCTATGCTGAGGGTCTTCCATTGGCTTTGAAAATAATGGGATCTAATTTGTTTGGAAAAACAGTGGAAGAGTGGAAATCTGCGTTGGGAAAATATGAGAAGATTCCTAACAAAGAGGTTCAGAATGTGCTAAGAGTAACCTATGATAATCTAGAAGAGAATGAGAAGGAAATTTTCCTTGATGTGGCATGCTTCTTCAAGGGAGAGACAGTGGAATATGTAGAAAAAACACTGCAAGCCTGTGGTTTTTATCCAACAATTGGTATCAGTGTACTTATTGATAGATCTCTTGTTAGTGTTGATGAATATAACAGGTTGAGAATGCATGATCTAATTCAAGACATGGGTAGGGAAATAGTTAGAGAAGTTTCACCTTTAGAACCTGGAAAAAGGAGTAGATTGTGGTATCATGAAGATGTTTTAGAAGTACTGACCGAAAATAAGGGAACTTATAGAATTCAGGGCATGATGGTGGACCTCCCTGATGGCTACATGGTACACTTGAAAGATGATTCCTTCAAGAAGATGAAAAATCTCAAAATTCTCATAGTTAGAAATGGAAACTTTTTTGGAAGCCCCCAACATCTTCCAAACAACTTAAGGTTGCTTGATTGGATGAAATATCCTTCCTCTTTGCCATCTAGTTTTCAACCAAAGAAACTTGTTGTACTCAACCTGTCAGGCAGTCGTTTCACAATGCAAGAGCCATTCATGTATTTGGATTCCTTGACATCTATGGACTTGAGTTCCTGCGAATTGTTGACAAAACTACCTGAAATTGCAGGAGTCCCTAATCTAACACAGCTAACTCTTGACTATTGTACAAATTTAGAAGAAGTTCATGAATCTGTTGGATTCCTTGAGAAACTTGTTGAGTTTAGGGCTTATGGATGCACCAAGCTTAAGGTTTTTCCAAATGCCATCAGGTTGACATCATTGAGAAGTCTTATCCTTAATTGGTGTTCAAGCCTTCAAAATTTTCCAGCTATTTTGGGGAAAATGGATAACCTCATTACCATTTCTATAGAAGGCACTGGTATAAAAGAATTGCCTCCTTCCATTGGAAACCTTGTTGGTCTTCAAGAATTAAGCATGACATCTTGCTTAAGCCTCAAGGAACTGCCTCACAACTTTGATATGCTTCAAAGTCTTACAAACCTTGATATGGATGGCTGTCCACAACTCCGAAACTTTCTGACAAAGTTGGCAAACATGGGAGAATCTACACATACCTTTGGCAACATTTTGTCACTGAATCTAGAAAACTGTGGCCTTATAGATGAAGATCTTCCCATAATTTTCAATAGTTTCCCAAATTTAGCATCAGCAGTACTCTCAAGAAATATTTTTGAAGCTCTTCCAAGCTGTATACAACAATGTCCTTGCTTGGAACTACTTCACTTGGACAACTGTAAAAATCTCCAAGAAATTCCAGCATTTCCTCCTAACATGCAGTACATTAATGCACAAAATTGTACATCATTGTCAGTAGATTCTTCCAATTTATTATTGAACAAGGTTTTCATCTTTTTTCTTAAATCTTCCTACTTTGAAACTTTTGAGGGATGGGAATTACAGGCTATGGTGCCTGGTACAGTGGTTCCAGAATGGTTTGACCACATCACCAAAGGAGAATACATGACATTTTGGGTACGTGAAAAGTTTCCAGCTATTATCATATGCTTTGTTCTTGAGGTTGAAAGTGAAATGAAGAAAATTTTCAATTGTGAAATCCGCTTTTATATAAATGGGGAAGAAGTTTATGAATTGGAAATTCCAAGAGGCTTTTCAGATATGGTGACAGATCATGTGTGGCTCTATGACTTGAGAACTCATTCATCCATCAACTGGCGCAGTCTTGATTTGTATCTGATGGATGACTGGAATCAGGTTGAGATTTCATGCGAGAAGATAAGTGGAGCATCAAATGTAACTGTGAGTTGGTGTGGAGTTCATGTGGTTAAGCAAGAAGCTAACATGAAGGATATACTACTTACAGATCCTGATCCAGATTTAGATTCAGTTATAGCTTCTGGATCAAACACACTAGTTTTTGATCATCCAGTGAAAGCTCAACTACAATCCCAAGTCACAAGCTTCATACTACAGACACCTCAAAATANTATATAA 4083 0.3987 MAITLGEGASSSSGFDRGWTYDVFLSFRGEDTRRSFTGFLYHGLCQRGINVFIDDEKLRRGEDLSPALLGVIQESRIAIIVFSQNYAFSTWCLDELAKIIDCYKTRGQLVWPVFFHVDPSVVRHQRGTFQTAMAQHEVRFMGNVQKLQKWKKSLFEASNFSGWTLENGYEFQIIQDIVEEASRKLSHTILHIAEYPVGIETRISEVMPLLQIXRIKSISFPYLDQNERLELRDLPVSEPGSIRFRLKLTTQGVLLWFLKQTLLLMAITLGEGASSSSGFDRGWTYDVFLSFRGEDTRRSFTGFLYHGLCQRGINVFIDDEKLRRGEDLSPALLGAIQESRIAIIVFSQNYAFSTWCLDELAKIIDCYKTRGQLVWPVFFHVDPSVVRHQRGTFQTAMAQHEVRFMGNVQKLQKWKKALFEASNFSGWTLENGYEFQIIQDIVEEASRKLSHTILHIAEYPVGIETRISEVMPLLQIEPGEDIRVIGIYGLGGIGKTTIARALYNMIAGQFEATSFLADIRESSSQRQGLVQLQESLLFDTVGDKNIKLGSIYKGIPIIKKRLCCKKVLLIIDDVDRLEQLQALAGGRDWFGFGSVIIITTRDKHLLSAHQVDKTYEVKKLNYGEAFELFTWSAFKRKTPDAGYLEVSNHVVLYAEGLPLALKIMGSNLFGKTVEEWKSALGKYEKIPNKEVQNVLRVTYDNLEENEKEIFLDVACFFKGETVEYVEKTLQACGFYPTIGISVLIDRSLVSVDEYNRLRMHDLIQDMGREIVREVSPLEPGKRSRLWYHEDVLEVLTENKGTYRIQGMMVDLPDGYMVHLKDDSFKKMKNLKILIVRNGNFFGSPQHLPNNLRLLDWMKYPSSLPSSFQPKKLVVLNLSGSRFTMQEPFMYLDSLTSMDLSSCELLTKLPEIAGVPNLTQLTLDYCTNLEEVHESVGFLEKLVEFRAYGCTKLKVFPNAIRLTSLRSLILNWCSSLQNFPAILGKMDNLITISIEGTGIKELPPSIGNLVGLQELSMTSCLSLKELPHNFDMLQSLTNLDMDGCPQLRNFLTKLANMGESTHTFGNILSLNLENCGLIDEDLPIIFNSFPNLASAVLSRNIFEALPSCIQQCPCLELLHLDNCKNLQEIPAFPPNMQYINAQNCTSLSVDSSNLLLNKVFIFFLKSSYFETFEGWELQAMVPGTVVPEWFDHITKGEYMTFWVREKFPAIIICFVLEVESEMKKIFNCEIRFYINGEEVYELEIPRGFSDMVTDHVWLYDLRTHSSINWRSLDLYLMDDWNQVEISCEKISGASNVTVSWCGVHVVKQEANMKDILLTDPDPDLDSVIASGSNTLVFDHPVKAQLQSQVTSFILQTPQNXI 1360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9258g00002 1360 Pfam TIR domain 285 450 IPR000157 GO:0007165
Vium9258g00002 1360 Pfam TIR domain 21 185 IPR000157 GO:0007165
Vium9258g00002 1360 SUPERFAMILY "Winged helix" DNA-binding domain 690 795 IPR036390 -
Vium9258g00002 1360 ProSiteProfiles TIR domain profile. 283 449 IPR000157 GO:0007165
Vium9258g00002 1360 FunFam Disease resistance protein (TIR-NBS-LRR class) 281 451 - -
Vium9258g00002 1360 SMART AAA_5 481 621 IPR003593 GO:0016887
Vium9258g00002 1360 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 187 - -
Vium9258g00002 1360 Gene3D Ribonuclease Inhibitor 802 975 IPR032675 -
Vium9258g00002 1360 SUPERFAMILY Toll/Interleukin receptor TIR domain 275 427 IPR035897 -
Vium9258g00002 1360 SUPERFAMILY L domain-like 779 1155 - -
Vium9258g00002 1360 Gene3D Ribonuclease Inhibitor 976 1157 IPR032675 -
Vium9258g00002 1360 Gene3D - 454 617 IPR027417 -
Vium9258g00002 1360 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 163 IPR035897 -
Vium9258g00002 1360 Gene3D - 279 453 IPR035897 -
Vium9258g00002 1360 Gene3D - 15 193 IPR035897 -
Vium9258g00002 1360 PRINTS Disease resistance protein signature 889 905 - -
Vium9258g00002 1360 PRINTS Disease resistance protein signature 654 668 - -
Vium9258g00002 1360 PRINTS Disease resistance protein signature 561 575 - -
Vium9258g00002 1360 PRINTS Disease resistance protein signature 484 499 - -
Vium9258g00002 1360 ProSiteProfiles TIR domain profile. 19 185 IPR000157 GO:0007165
Vium9258g00002 1360 SMART till_3 284 424 IPR000157 GO:0007165
Vium9258g00002 1360 SMART till_3 20 160 IPR000157 GO:0007165
Vium9258g00002 1360 Gene3D - 619 703 IPR042197 -
Vium9258g00002 1360 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 285 1026 IPR044974 GO:0006952
Vium9258g00002 1360 Pfam NB-ARC domain 465 695 IPR002182 GO:0043531
Vium9258g00002 1360 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 449 712 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9258g00002 Vium-Chr9258 20663 28686 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9258g00002 15 212 WRKY Transcription Factor Family AT4G12020 24.500 1.05e-08 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9258g00002 - - gmx:100798893 1825.83