Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9258g00001 ATGGCAATTACGTTGGGTGAAGGAGCTTCTTCATCTTCTGGTTTTGACCGTGGATGGACTTATGATGTGTTCTTGAGTTTCAGAGGTGAAGATACAAGGAGAAGCTTTACAGGATTTCTGTATCATGGTTTGTGCCAAAGGGGTATCAATGTTTTCATTGATGATGAGAAGCTCAGGAGAGGGGAAGACTTATCCCCTGCTCTTCTTGGAGCCATTCAAGAGTCTAGAATTGCCATCATTGTCTTCTCTCAAAACTATGCATTCTCCACATGGTGTCTTGATGAACTTGCAAAGATCATTGACTGTTACAAAACCAGAGGGCAACTTGTGTGGCCAGTTTTCTTCCATGTCGACCCTTCTGTGGTGCGCCATCAGAGAGGAACTTTTCAAACAGCAATGGCCCAACATGAAGTCAGATTCATGGGTAATGTCCAAAAGCTGCAGAAGTGGAAGAAAGCCTTGTTTGAAGCATCCAATTTCTCAGGTTGGACCTTAGAAAACGGGTATGAATTTCAGATAATCCAAGATATCGTTGAGGAGGCCTCTAGAAAGTTAAGCCACACCATTTTGCACATTGCTGAATACCCAGTTGGAATAGAGACTCGTATATCAGAAGTGATGCCTCTTTTGCAGATTGAACCGGGTGAAGATATTCGTGTCATTGGGATCTATGGACTTGGAGGCATAGGTAAGACAACAATTGCAAGGGCATTGTACAACATGATTGCAGGCCAGTTTGAAGCTACAAGTTTCCTTGCTGACATAAGAGAAAGTTCAAGTCAAAGACAAGGGCTAGTGCAGCTTCAAGAATCACTTCTTTTTGATACTGTTGGGGACAAGAACATCAAGCTGGGAAGCATTTACAAAGGAATCCCTATTATCAAGAAAAGGCTTTGTTGCAAAAAAGTACTTTTGATCATTGATGATGTTGACAGGTTGGAGCAGCTTCAAGCACTGGCAGGAGGACGCGATTGGTTTGGTTTTGGAAGTGTGATCATCATAACAACAAGAGATAAGCACTTGCTGAGTGCTCATCAGGTTGACAAAACCTATGAGGTAAAGAAATTAAACTATGGTGAAGCTTTTGAGCTGTTCACTTGGAGTGCTTTCAAAAGGAAGACACCTGATGCAGGCTATTTGGAGGTTTCTAACCATGTGGTTCTCTATGCTGAGGGTCTTCCATTGGCTTTGAAAATAATGGGATCTAATTTGTTTGGAAAAACAGTGGAAGAGTGGAAATCTGCGTTGGGAAAATATGAGAAGATTCCTAACAAAGAGGTTCAGAATGTGCTAAGAGTAACCTATGATAATCTAGAAGAGAATGAGAAGGAAATTTTCCTTGATGTGGCATGCTTCTTCAAGGGAGAGACAGTGGAATATGTAGAAAAAACACTGCAAGCCTGTGGTTTTTATCCAACAATTGGTATCAGTGTACTTATTGATAGATCTCTTGTTAGTGTTGATGAATATAACAGGTTGAGAATGCATGATCTAATTCAAGACATGGGTAGGGAAATAGTTAGAGAAGTTTCACCTTTAGAACCTGGAAAAAGGAGTAGATTGTGGTATCATGAAGATGTTTTAGAAGTACTGACCGAAAATAAGGGAACTTATAGAATTCAGGGCATGATGGTGGACCTCCCTGATGGCTACATGGTACACTTGAAAGATGATTCCTTCAAGAAGATGAAAAATCTCAAAATTCTCATAGTTAGAAATGGAAACTTTTTTGGAAGCCCCCAACATCTTCCAAACAACTTAAGGTTGCTTGATTGGATGAAATATCCTTCCTCTTTGCCATCTAGTTTTCAACCAAAGAAACTTGTTGTACTCAACCTGTCAGGCAGTCGTTTCACAATGCAAGAGCCATTCATGTATTTGGATTCCTTGACATCTATGGACTTGAGTTCCTGCGAATTGTTGACAAAACTACCTGAAATTGCAGGAGTCCCTAATCTAACACAGCTAACTCTTGACTATTGTACAAATTTAGAAGAAGTTCATGAATCTGTTGGATTCCTTGAGAAACTTGTTGAGTTTAGGGCTTATGGATGCACCAAGCTTAAGGTTTTTCCAAATGCCATCAGGTTGACATCATTGAGAAGTCTTATCCTTAATTGGTGTTCAAGCCTTCAAAATTTTCCAGCTATTTTGGGGAAAATGGATAACCTCATTACCATTTCTATAGAAGGCACTGGTATAAAAGAATTGCCTCCTTCCATTGGAAACCTTGTTGGTCTTCAAGAATTAAGCATGACATCTTGCTTAAGCCTCAAGGAACTGCCTCACAACTTTGATATGCTTCAAAGTCTTACAAACCTTGATATGGATGGCTGTCCACAACTCCGAAACTTTCTGACAAAGTTGGCAAACATGGGAGAATCTACACATACCTTTGGCAACATTTTGTCACTGAATCTAGAAAACTGTGGCCTTATAGATGAAGACCTTCCCATAATTTTCAATAGTTTCCCAAATTTAGCATCAGCAGTACTCTCAAGAAATAATTTTGAAGCTCTTCCAAGCTGCATACAACAATGTCCTTGCTTGGAACTACTTCACTTGGACAACTGTAAAAAACTCCAAGAAATTCCAGCATTTCCTCCTAACATGCAGTACATTAATGCACAAAATTGTACATCATTGTCAGTAGAATCTTCCAATTTATTATTGAACAAGGAAACTTTTGAGGGATGGGAATTACAGGCTATGGTGCCTGGGACAGTGGTTCCAGAATGGTTTGACCACATCACCAAAGGAGAATACATGACATTTTGGGTACGTGAAAAGTTTCCAGCTATTATCATATGCTTTGTTCTTGAGGTTGAAAGTGAAATGAAGAAAATTTTCAATTGTGAAATCCGCTTTTATATAAATGGGGAAGAAGTTTATGAATTGGAAATTCCAAGAGGCTTTTCAGATATGGTGACAGATCATGTGTGGCTCTATGACTTGAGAACTCATTCATCCATCAACTGGCGCAGTCTTGATTTGTATCTGATGGATGACTGGAATCAGGTTGAGATTTCATGCGAGAAGATAAGTGGAGCATCAAATGTAACTGTGAGTTGGTGTGGAGTTCATGTGGTTAAGCAAGAAGCTAACATGAAGGATATACTACTTACAGATCCTGATCCAGATTTAGATTCAGTTATAGCTTCTGGATCAAACACACTAGTTTTTGATCATCCAGTGAAAGCTCAACTACAATCCCAAGTCACAAGCTTCATACTACAGACACCTCAAAATAATAACAGCTCCACAATTGTGCTGCCAACAACAGTTCAAACCAGCTTGACTGTGAATGATGCAGACATGGAAGCATTTTATGCTGTTCTGGATGATGAGATCTCTGTGGTGTCACTTAACAATGATTCAACAGTGGTTTCTAAATTGACCAACCAAAGGCCAAGTGAAGAGACAAAGAAAGCATTGAAGGCACTTCAAGCCCATGTCACTAAAGAATTTTCTGCTCTGCTGGGCCCTAATGAATACAGTACAATGAATGATACCTTAGAGTACCTCACAAATTTGCCAGCAGAAGATGGAATATCAGTGGAAATAAGATCTCTGATAATACAAGTTTCAAGACAGTTCACTCGTTGGAGTAGGGATTACACATCTGAGAACAAGAAAGTAGAGTCTACCACAGCCAAATTGTTGAAAGCTGATGAACTAGAAAAGTGTCTTGAAGCTAATAAGACTAACTTCAAGCAAGTGATGTGCATGGAAAATGAGTTGTGCAATGATTTGGCCTATTTGGAACAAAGAAAGAGAGAGCTAGAAGAGCAGATAAAGGCTGTTAAAGCTAACATCTCTGCTTCAGAAGCAGCTAAGAACATGGCTACTCAAATAAAAAGAAAAATCTTTGGGGAAGCTAAGATTTTGAAAGCTCAAAGAGATGAGTTGAGGGAACAAGTGCCACACTTGAGAGATGAACAGGAATTGGCCAAGAAAATTCAGTCAAATATCAGAGATGAATGGTCAAAGCTTGGTGAAAAATTTAACTATGAATTAAGGCATGGAAAAATTGATTAG 4038 0.3935 MAITLGEGASSSSGFDRGWTYDVFLSFRGEDTRRSFTGFLYHGLCQRGINVFIDDEKLRRGEDLSPALLGAIQESRIAIIVFSQNYAFSTWCLDELAKIIDCYKTRGQLVWPVFFHVDPSVVRHQRGTFQTAMAQHEVRFMGNVQKLQKWKKALFEASNFSGWTLENGYEFQIIQDIVEEASRKLSHTILHIAEYPVGIETRISEVMPLLQIEPGEDIRVIGIYGLGGIGKTTIARALYNMIAGQFEATSFLADIRESSSQRQGLVQLQESLLFDTVGDKNIKLGSIYKGIPIIKKRLCCKKVLLIIDDVDRLEQLQALAGGRDWFGFGSVIIITTRDKHLLSAHQVDKTYEVKKLNYGEAFELFTWSAFKRKTPDAGYLEVSNHVVLYAEGLPLALKIMGSNLFGKTVEEWKSALGKYEKIPNKEVQNVLRVTYDNLEENEKEIFLDVACFFKGETVEYVEKTLQACGFYPTIGISVLIDRSLVSVDEYNRLRMHDLIQDMGREIVREVSPLEPGKRSRLWYHEDVLEVLTENKGTYRIQGMMVDLPDGYMVHLKDDSFKKMKNLKILIVRNGNFFGSPQHLPNNLRLLDWMKYPSSLPSSFQPKKLVVLNLSGSRFTMQEPFMYLDSLTSMDLSSCELLTKLPEIAGVPNLTQLTLDYCTNLEEVHESVGFLEKLVEFRAYGCTKLKVFPNAIRLTSLRSLILNWCSSLQNFPAILGKMDNLITISIEGTGIKELPPSIGNLVGLQELSMTSCLSLKELPHNFDMLQSLTNLDMDGCPQLRNFLTKLANMGESTHTFGNILSLNLENCGLIDEDLPIIFNSFPNLASAVLSRNNFEALPSCIQQCPCLELLHLDNCKKLQEIPAFPPNMQYINAQNCTSLSVESSNLLLNKETFEGWELQAMVPGTVVPEWFDHITKGEYMTFWVREKFPAIIICFVLEVESEMKKIFNCEIRFYINGEEVYELEIPRGFSDMVTDHVWLYDLRTHSSINWRSLDLYLMDDWNQVEISCEKISGASNVTVSWCGVHVVKQEANMKDILLTDPDPDLDSVIASGSNTLVFDHPVKAQLQSQVTSFILQTPQNNNSSTIVLPTTVQTSLTVNDADMEAFYAVLDDEISVVSLNNDSTVVSKLTNQRPSEETKKALKALQAHVTKEFSALLGPNEYSTMNDTLEYLTNLPAEDGISVEIRSLIIQVSRQFTRWSRDYTSENKKVESTTAKLLKADELEKCLEANKTNFKQVMCMENELCNDLAYLEQRKRELEEQIKAVKANISASEAAKNMATQIKRKIFGEAKILKAQRDELREQVPHLRDEQELAKKIQSNIRDEWSKLGEKFNYELRHGKID 1345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9258g00001 1345 Gene3D - 355 439 IPR042197 -
Vium9258g00001 1345 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 762 IPR044974 GO:0006952
Vium9258g00001 1345 Pfam NB-ARC domain 201 431 IPR002182 GO:0043531
Vium9258g00001 1345 SUPERFAMILY L domain-like 515 888 - -
Vium9258g00001 1345 ProSiteProfiles TIR domain profile. 19 185 IPR000157 GO:0007165
Vium9258g00001 1345 Gene3D - 15 189 IPR035897 -
Vium9258g00001 1345 SUPERFAMILY "Winged helix" DNA-binding domain 426 531 IPR036390 -
Vium9258g00001 1345 Gene3D Ribonuclease Inhibitor 710 894 IPR032675 -
Vium9258g00001 1345 PRINTS Disease resistance protein signature 220 235 - -
Vium9258g00001 1345 PRINTS Disease resistance protein signature 390 404 - -
Vium9258g00001 1345 PRINTS Disease resistance protein signature 297 311 - -
Vium9258g00001 1345 PRINTS Disease resistance protein signature 625 641 - -
Vium9258g00001 1345 Coils Coil 1244 1278 - -
Vium9258g00001 1345 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 448 IPR027417 -
Vium9258g00001 1345 CDD UDM1_RNF168 1258 1320 - -
Vium9258g00001 1345 SMART AAA_5 217 357 IPR003593 GO:0016887
Vium9258g00001 1345 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 163 IPR035897 -
Vium9258g00001 1345 Coils Coil 1286 1313 - -
Vium9258g00001 1345 Gene3D - 190 353 IPR027417 -
Vium9258g00001 1345 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 187 - -
Vium9258g00001 1345 SMART till_3 20 160 IPR000157 GO:0007165
Vium9258g00001 1345 Pfam TIR domain 21 186 IPR000157 GO:0007165
Vium9258g00001 1345 Gene3D Ribonuclease Inhibitor 543 709 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9258g00001 Vium-Chr9258 13409 18059 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9258g00001 15 785 WRKY Transcription Factor Family AT4G12020 31.414 2.38e-92 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9258g00001 - - psat:127127957 1909.81