Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium924g00013 ATGGAACAAGGCTTTACTTATGCCACAACAGAACTTGCTGCTCAAACTAGTGGAACGTTGTTAGCTCGTCAAGCCCATCAATTTCTGAGGAAGTGGTTAATTGGTCATCCAAAATTTGTGTCAAACGAAGTTTACATTGCTGGTGATTCATATTCTGGCATTCCCGTTCCAGCAATTGTTCAAGAAATTGCACAAGGTAATGAAAAAGGGTTTCCAAGGATAAATATCCAGGGGTACCTTTTGGGGAATCCGATGACAACTAGAAGGGACGGAAACTATGCAATCCCTTTTGCTCATGGAATGGCACTTATTTCTGATGAACTATTTGAGTCTCTACAAAAAAATTGTAAAGGAAACTACGTCGATGTGGACTCCGAAAATGTATTATGCTATAAAGATATGGACTCATTCCATAAGCTTGTATCAGGACTTTCTCATTACAATATTTTGGAACCGTTGTGTGAGTTCGATCATTCTACACCTCCTTTGAGAAGATCCCTAATTGAGAAATTTCCTGGCAAGCATTTCTTGAAAACTGATCTCAAATTGCCAGACGTAACATGTCCGACTTATACATCATTCCTATCTGCTTATTGGGCAAATGATGATAATGTTCGAACTGCACTTAATGTTCGCAAGGGAAGTATAGGAACATGGATTCGTTGTAATCATGATGAAGGTTTCAAGTCCGATATTTCAAGCAGCATTGAATACCACGCAAATCTTAGTAGAAAAGGCTATCGTTCATTAATATACAGTGGCGATCATGACATGGTGGTTCCTTTCTTGGGAACTCAAGAATGGATAAGATCTTTAAACTACTCTATTGTTGATGATTGGAGGCCATGGAATTCAAATGGACAAGTTGGAGGATACACAAGGACTTACTCTAATCAAATGACATTTGCAACTGTGAAGGGTGCGGGACACACAGCTCCGATGTACAAATCGAAAGAATGTTTTGACATGTTCAGCAGATGGATATCTAAGAGGGCTTTGTAG 1002 0.3922 MEQGFTYATTELAAQTSGTLLARQAHQFLRKWLIGHPKFVSNEVYIAGDSYSGIPVPAIVQEIAQGNEKGFPRINIQGYLLGNPMTTRRDGNYAIPFAHGMALISDELFESLQKNCKGNYVDVDSENVLCYKDMDSFHKLVSGLSHYNILEPLCEFDHSTPPLRRSLIEKFPGKHFLKTDLKLPDVTCPTYTSFLSAYWANDDNVRTALNVRKGSIGTWIRCNHDEGFKSDISSSIEYHANLSRKGYRSLIYSGDHDMVVPFLGTQEWIRSLNYSIVDDWRPWNSNGQVGGYTRTYSNQMTFATVKGAGHTAPMYKSKECFDMFSRWISKRAL 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium924g00013 333 PRINTS Carboxypeptidase C serine protease (S10) family signature 32 57 IPR001563 GO:0004185|GO:0006508
Vium924g00013 333 PRINTS Carboxypeptidase C serine protease (S10) family signature 300 313 IPR001563 GO:0004185|GO:0006508
Vium924g00013 333 Pfam Serine carboxypeptidase 3 329 IPR001563 GO:0004185|GO:0006508
Vium924g00013 333 Gene3D alpha/beta hydrolase 1 333 IPR029058 -
Vium924g00013 333 FunFam Carboxypeptidase 235 330 - -
Vium924g00013 333 SUPERFAMILY alpha/beta-Hydrolases 4 330 IPR029058 -
Vium924g00013 333 FunFam Carboxypeptidase 187 332 - -
Vium924g00013 333 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 3 316 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium924g00013 Vium-Chr924 135725 149554 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium924g00013 195 333 Calmodulin-binding Proteins AT2G22960 64.748 4.56e-61 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium924g00013 K16296 - gmx:100792006 477.248