Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium924g00012 ATGGAACAAGACTTGCCTGTTTTCACAGGCTTTACTTATGCCACAACAGAACTTGCTGCTCAAACTAGTGGAACGTTGTTAGCTCGTCAAGCCCATCAATTTCTGAGGAAGTGGTTAATTGGTCATCCAAAATTTGTGTCAAACGAAGTTTACATTGCTGGTGATTCATATTCTGGCATTCCCGTTCCAGCAATTGTTCAAGAAATTGCACAAGGTAATGAAAAAGGGTTTCCAAGGATAAATATCCAGGGGTACCTTTTGGGGAATCCGATGACAACTAGAAGGGACGGAAACTATGCAATCCCTTTTGCTCATGGAATGGCACTTATTTCTGATGAACTATTTGAGTCTCTACAAAAAAATTGTAAAGGAAACTACGTCGATGTGGACTCCGAAAATGTATTATGCTATAAAGATATGGACTCATTCCATAAGCTTGTATCAGGACTTTCTCATTACAATATTTTGGAACCGTTGTGTGAGTTCGATCATTCTACACCTCCTTTGAGAAGATCCCTAATTGAGAAATTTCCTGGCAAGCATTTCTTGAAAACTGATCTCAAATTGCCAGACGTAACATGTCCGACTTATACATCATTCCTATCTGCTTATTGGGCAAATGATGATAATGTTCGAACTGCACTTAATGTTCGCAAGGGAAGTATAGGAACATGGATTCGTTGTAATCATGATGAAGGTTTCAAGTCCGATATTTCAAGCAGCATTGAATACCACGCAAATCTTAGTAGAAAAGGCTATCGTTCATTAATATACAGTGGCGATCATGACATGGTGGTTCCTTTCTTGGGAACTCAAGAATGGATAAGATCTTTAAACTACTCTATTGTTGATGATTGGAGGCCATGGAATTCAAATGGACAAGTTGGAGGATACACAAGGACTTACTCTAATCAAATGACATTTGCAACTGTGAAGGGTGCGGGACACACAGCTCCGATGTACAAATCGAAAGAATGTTTTGACATGTTCAGCAGATGGATATCTAAGAGGGCTTTGTAG 1020 0.3931 MEQDLPVFTGFTYATTELAAQTSGTLLARQAHQFLRKWLIGHPKFVSNEVYIAGDSYSGIPVPAIVQEIAQGNEKGFPRINIQGYLLGNPMTTRRDGNYAIPFAHGMALISDELFESLQKNCKGNYVDVDSENVLCYKDMDSFHKLVSGLSHYNILEPLCEFDHSTPPLRRSLIEKFPGKHFLKTDLKLPDVTCPTYTSFLSAYWANDDNVRTALNVRKGSIGTWIRCNHDEGFKSDISSSIEYHANLSRKGYRSLIYSGDHDMVVPFLGTQEWIRSLNYSIVDDWRPWNSNGQVGGYTRTYSNQMTFATVKGAGHTAPMYKSKECFDMFSRWISKRAL 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium924g00012 339 Pfam Serine carboxypeptidase 4 335 IPR001563 GO:0004185|GO:0006508
Vium924g00012 339 PRINTS Carboxypeptidase C serine protease (S10) family signature 38 63 IPR001563 GO:0004185|GO:0006508
Vium924g00012 339 PRINTS Carboxypeptidase C serine protease (S10) family signature 3 13 IPR001563 GO:0004185|GO:0006508
Vium924g00012 339 PRINTS Carboxypeptidase C serine protease (S10) family signature 306 319 IPR001563 GO:0004185|GO:0006508
Vium924g00012 339 SUPERFAMILY alpha/beta-Hydrolases 4 336 IPR029058 -
Vium924g00012 339 Gene3D alpha/beta hydrolase 3 339 IPR029058 -
Vium924g00012 339 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 4 322 IPR001563 GO:0004185|GO:0006508
Vium924g00012 339 FunFam Carboxypeptidase 241 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium924g00012 Vium-Chr924 135725 149554 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium924g00012 201 339 Calmodulin-binding Proteins AT2G22960 64.748 5.34e-61 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium924g00012 K16296 - gmx:100792006 486.493