Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium924g00011 ATGGGAAAGTTGAAGTCAAGTGTCATTTCTTCAAATCTGGTTGACCGTGGTATTCTACTTTTCCTACTTCTTTTATCATACTATTCTATTGAACCAGCCTCTTGTGCCTCCAGAGTGAAGTTCCTTCCAGGATTCGAGGGACCCCTTCCTTTTGTTCTTGAAACTGGGTATGTGGGAGTGGGAGAATCAGAGGATGTGCAGACATTTTACTACTTCATTGAGTCAGATAACAACCCCAAGGAAGATCCTCTCCTGCTTTGGCTATCCGGTGGCCCTGGTTGCTCAGGCCTAAGTGCCCTTTTTCTTGAAATAGGTCCACTTGCATTAAAACAGGAGGAGTACAATGGAGGTCCACCCAACTTGATCTTCAGGAATCAATCATGGAACAAGGTTAGTAACATTATATATGTAGACTTGCCTGTTTTCACAGGCTTTACTTATGCCACAACAGAACTTGCTGCTCAAACTAGTGGAACGTTGTTAGCTCGTCAAGCCCATCAATTTCTGAGGAAGTGGTTAATTGGTCATCCAAAATTTGTGTCAAACGAAGTTTACATTGCTGGTGATTCATATTCTGGCATTCCCGTTCCAGCAATTGTTCAAGAAATTGCACAAGGTAATGAAAAAGGGTTTCCAAGGATAAATATCCAGGGGTACCTTTTGGGGAATCCGATGACAACTAGAAGGGACGGAAACTATGCAATCCCTTTTGCTCATGGAATGGCACTTATTTCTGATGAACTATTTGAGTCTCTACAAAAAAATTGTAAAGGAAACTACGTCGATGTGGACTCCGAAAATGTATTATGCTATAAAGATATGGACTCATTCCATAAGCTTGTATCAGGACTTTCTCATTACAATATTTTGGAACCGTTGTGTGAGTTCGATCATTCTACACCTCCTTTGAGAAGATCCCTAATTGAGAAATTTCCTGGCAAGCATTTCTTGAAAACTGATCTCAAATTGCCAGACGTAACATGTCCGACTTATACATCATTCCTATCTGCTTATTGGGCAAATGATGATAATGTTCGAACTGCACTTAATGTTCGCAAGGGAAGTATAGGAACATGGATTCGTTGTAATCATGATGAAGGTTTCAAGTCCGATATTTCAAGCAGCATTGAATACCACGCAAATCTTAGTAGAAAAGGCTATCGTTCATTAATATACAGTGGCGATCATGACATGGTGGTTCCTTTCTTGGGAACTCAAGAATGGATAAGATCTTTAAACTACTCTATTGTTGATGATTGGAGGCCATGGAATTCAAATGGACAAGTTGGAGGATACACAAGGACTTACTCTAATCAAATGACATTTGCAACTGTGAAGGGTGCGGGACACACAGCTCCGATGTACAAATCGAAAGAATGTTTTGACATGTTCAGCAGATGGATATCTAAGAGGGCTTTGTAG 1422 0.4051 MGKLKSSVISSNLVDRGILLFLLLLSYYSIEPASCASRVKFLPGFEGPLPFVLETGYVGVGESEDVQTFYYFIESDNNPKEDPLLLWLSGGPGCSGLSALFLEIGPLALKQEEYNGGPPNLIFRNQSWNKVSNIIYVDLPVFTGFTYATTELAAQTSGTLLARQAHQFLRKWLIGHPKFVSNEVYIAGDSYSGIPVPAIVQEIAQGNEKGFPRINIQGYLLGNPMTTRRDGNYAIPFAHGMALISDELFESLQKNCKGNYVDVDSENVLCYKDMDSFHKLVSGLSHYNILEPLCEFDHSTPPLRRSLIEKFPGKHFLKTDLKLPDVTCPTYTSFLSAYWANDDNVRTALNVRKGSIGTWIRCNHDEGFKSDISSSIEYHANLSRKGYRSLIYSGDHDMVVPFLGTQEWIRSLNYSIVDDWRPWNSNGQVGGYTRTYSNQMTFATVKGAGHTAPMYKSKECFDMFSRWISKRAL 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium924g00011 473 Gene3D alpha/beta hydrolase 33 302 IPR029058 -
Vium924g00011 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 172 197 IPR001563 GO:0004185|GO:0006508
Vium924g00011 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 440 453 IPR001563 GO:0004185|GO:0006508
Vium924g00011 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 136 IPR001563 GO:0004185|GO:0006508
Vium924g00011 473 PRINTS Carboxypeptidase C serine protease (S10) family signature 137 147 IPR001563 GO:0004185|GO:0006508
Vium924g00011 473 FunFam Carboxypeptidase 327 472 - -
Vium924g00011 473 FunFam Carboxypeptidase 375 470 - -
Vium924g00011 473 Gene3D - 328 472 - -
Vium924g00011 473 FunFam Serine carboxypeptidase-like 11 33 473 - -
Vium924g00011 473 SUPERFAMILY alpha/beta-Hydrolases 39 470 IPR029058 -
Vium924g00011 473 Pfam Serine carboxypeptidase 43 469 IPR001563 GO:0004185|GO:0006508
Vium924g00011 473 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 37 456 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium924g00011 Vium-Chr924 135330 149554 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium924g00011 33 62 Calmodulin-binding Proteins AT2G22960 70.000 1.74e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium924g00011 K16296 - gmx:100792006 661.759