Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium924g00010 ATGGGAAAGTTGAAGTCAAGTGTCATTTCTTCAAATCTGGTTGACCGTGGTATTCTACTTTTCCTACTTCTTTTATCATACTATTCTATTGAACCAGCCTCTTGTGCCTCCAGAGTGAAGTTCCTTCCAGGATTCGAGGGACCCCTTCCTTTTGTTCTTGAAACTGGGTATGTGGGAGTGGGAGAATCAGAGGATGTGCAGACATTTTACTACTTCATTGAGTCAGATAACAACCCCAAGGAAGATCCTCTCCTGCTTTGGCTATCCGGTGGCCCTGGTTGCTCAGGCCTAAGTGCCCTTTTTCTTGAAATAGGAGGAGTACAATGGAGGTCCACCCAACTTGATCTTCAGGAATCAATCATGGAACAAGGCTTTACTTATGCCACAACAGAACTTGCTGCTCAAACTAGTGGAACGTTGTTAGCTCGTCAAGCCCATCAATTTCTGAGGAAGTGGTTAATTGGTCATCCAAAATTTGTGTCAAACGAAGTTTACATTGCTGGTGATTCATATTCTGGCATTCCCGTTCCAGCAATTGTTCAAGAAATTGCACAAGGTAATGAAAAAGGGTTTCCAAGGATAAATATCCAGGGGTACCTTTTGGGGAATCCGATGACAACTAGAAGGGACGGAAACTATGCAATCCCTTTTGCTCATGGAATGGCACTTATTTCTGATGAACTATTTGAGTCTCTACAAAAAAATTGTAAAGGAAACTACGTCGATGTGGACTCCGAAAATGTATTATGCTATAAAGATATGGACTCATTCCATAAGCTTGTATCAGGACTTTCTCATTACAATATTTTGGAACCGTTGTGTGAGTTCGATCATTCTACACCTCCTTTGAGAAGATCCCTAATTGAGAAATTTCCTGGCAAGCATTTCTTGAAAACTGATCTCAAATTGCCAGACGTAACATGTCCGACTTATACATCATTCCTATCTGCTTATTGGGCAAATGATGATAATGTTCGAACTGCACTTAATGTTCGCAAGGGAAGTATAGGAACATGGATTCGTTGTAATCATGATGAAGGTTTCAAGTCCGATATTTCAAGCAGCATTGAATACCACGCAAATCTTAGTAGAAAAGGCTATCGTTCATTAATATACAGTGGCGATCATGACATGGTGGTTCCTTTCTTGGGAACTCAAGAATGGATAAGATCTTTAAACTACTCTATTGTTGATGATTGGAGGCCATGGAATTCAAATGGACAAGTTGGAGGATACACAAGGACTTACTCTAATCAAATGACATTTGCAACTGTGAAGGGTGCGGGACACACAGCTCCGATGTACAAATCGAAAGAATGTTTTGACATGTTCAGCAGATGGATATCTAAGAGGGCTTTGTAG 1362 0.4075 MGKLKSSVISSNLVDRGILLFLLLLSYYSIEPASCASRVKFLPGFEGPLPFVLETGYVGVGESEDVQTFYYFIESDNNPKEDPLLLWLSGGPGCSGLSALFLEIGGVQWRSTQLDLQESIMEQGFTYATTELAAQTSGTLLARQAHQFLRKWLIGHPKFVSNEVYIAGDSYSGIPVPAIVQEIAQGNEKGFPRINIQGYLLGNPMTTRRDGNYAIPFAHGMALISDELFESLQKNCKGNYVDVDSENVLCYKDMDSFHKLVSGLSHYNILEPLCEFDHSTPPLRRSLIEKFPGKHFLKTDLKLPDVTCPTYTSFLSAYWANDDNVRTALNVRKGSIGTWIRCNHDEGFKSDISSSIEYHANLSRKGYRSLIYSGDHDMVVPFLGTQEWIRSLNYSIVDDWRPWNSNGQVGGYTRTYSNQMTFATVKGAGHTAPMYKSKECFDMFSRWISKRAL 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium924g00010 453 Coils Coil 449 453 - -
Vium924g00010 453 PRINTS Carboxypeptidase C serine protease (S10) family signature 152 177 IPR001563 GO:0004185|GO:0006508
Vium924g00010 453 PRINTS Carboxypeptidase C serine protease (S10) family signature 420 433 IPR001563 GO:0004185|GO:0006508
Vium924g00010 453 SUPERFAMILY alpha/beta-Hydrolases 39 450 IPR029058 -
Vium924g00010 453 FunFam Carboxypeptidase 355 450 - -
Vium924g00010 453 FunFam Carboxypeptidase 307 452 - -
Vium924g00010 453 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 37 436 IPR001563 GO:0004185|GO:0006508
Vium924g00010 453 Gene3D - 308 452 - -
Vium924g00010 453 Pfam Serine carboxypeptidase 43 449 IPR001563 GO:0004185|GO:0006508
Vium924g00010 453 Gene3D alpha/beta hydrolase 33 282 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium924g00010 Vium-Chr924 135326 149554 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium924g00010 33 62 Calmodulin-binding Proteins AT2G22960 70.000 1.40e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium924g00010 K16296 - gmx:100792006 597.045