Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium924g00007 ATGCAGAGCGCGGCTTTCACTCTCTCTCCGTCGCTCTCTCTTCCTCTCCGCAACTATTCTCTAAACGCTTCTAGACCTTCCCTCCCTCTCAGACTTTTCGCCAAACACGCAGAAGGCGTCAACTCCAATGGCGCCTCTTCCACTTCCTTCATCCGCCGATCTTGGACTGTCTCTCCTTCCTCTTCCTTCAAGTTCCGCCCGCTCCCTCCCTCTCCTCCGCGCGCCGCGGAGAACGCCGTTCCCGACAGCGCGCCTGCCGAAAATTCGCTCTTCAAAACACTCGAGCTCGGCTCCTTGTTTGGCCTCTGGTACCTCTTCAACATCTACTTCAATATCTACAACAAACAGGTGTTGAAGGCGTTTCATTATCCGGTAACTGTGACTGTTGTTCAATTTGCGGTTGGGACTGTGCTCGTGGCGATTATGTGGGGTTTGAATCTCTACAAGAGGCCGAAGATCAGTGGTGCTATGCTTGGAGCGATTTTGCCACTGGCTGCGGTGCATACGTTGGGGAATCTTTTCACTAATATGAGTCTTGGGAAGGTGGCCGTGTCTTTCACTCACACTATCAAGGCCATGGAGCCTTTCTTTTCAGTGGTCCTTTCTGCCATGTTCCTTGGAGAGTTTCCTACACCGTGGGTGGTTGGTTCCCTTGTGCCTATTGTTGGTGGAGTTGCACTGGCGTCTGTTACTGAGGCCTCTTTCAATTGGGCCGGATTTTGGAGTGCAATGGCCTCAAATGTGACAAATCAATCCCGTAATGTTCTTAGCAAAAAGGCTATGGTTAAGAATGAGGATTCTATGGACAATATCACTCTATTTTCTATAATAACAGTAATGTCCTTCTTCTTATTAGCACCAGTGGCTGTCTTCATGGAGGGTGTCAAATTTACCCCTGCTTACTTGCAATCTGCTGGGGTAAATGTTAAACAACTTTACGTCAGATCTCTTCTTGCCGCACTCTGTTTCCATGCGTATCAACAAGTGTCTTATATGATATTACAAAGGGTATCACCTGTTACCCACTCTGTGGGCAATTGTGTGAAGCGGGTTGTGGTCATTGTTAGCTCTGTCATTTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGGTACTGCTATAGCTCTTGCTGGCGTGTTCCTCTATTCAAGGGTGAAGCGAATTAAGTCAAAGCCAAAAACAGCTTAA 1191 0.4803 MQSAAFTLSPSLSLPLRNYSLNASRPSLPLRLFAKHAEGVNSNGASSTSFIRRSWTVSPSSSFKFRPLPPSPPRAAENAVPDSAPAENSLFKTLELGSLFGLWYLFNIYFNIYNKQVLKAFHYPVTVTVVQFAVGTVLVAIMWGLNLYKRPKISGAMLGAILPLAAVHTLGNLFTNMSLGKVAVSFTHTIKAMEPFFSVVLSAMFLGEFPTPWVVGSLVPIVGGVALASVTEASFNWAGFWSAMASNVTNQSRNVLSKKAMVKNEDSMDNITLFSIITVMSFFLLAPVAVFMEGVKFTPAYLQSAGVNVKQLYVRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPVNAFGTAIALAGVFLYSRVKRIKSKPKTA 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium924g00007 396 SUPERFAMILY Multidrug resistance efflux transporter EmrE 141 230 - -
Vium924g00007 396 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 94 394 IPR004696 GO:0016020|GO:0022857|GO:0055085
Vium924g00007 396 SUPERFAMILY Multidrug resistance efflux transporter EmrE 304 387 - -
Vium924g00007 396 MobiDBLite consensus disorder prediction 62 81 - -
Vium924g00007 396 Pfam Triose-phosphate Transporter family 95 384 IPR004853 -
Vium924g00007 396 PANTHER SOLUTE CARRIER FAMILY 35 95 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium924g00007 Vium-Chr924 117650 121473 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium924g00007 1 396 Antiporters AT5G33320 71.292 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium924g00007 K15283 - gmx:100804563 696.427