Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium922g00027 ATGGGTGTAAACTTTAACAGAGTAGAGGACATAGCATGCAACAATGGCTGCAGCATGAAGATCCAAAGTGATACAGAAATGGCAATGCCAGTGCCAGCCATGGAAATCCACAAGGTTCAGCTGCCACCAGAACGAACCACCTTGCAGAAACTGAGACACAGACTCTCTGAGATCTTCTTCCCAGATGACCCTCTTCACAGGTTCAAGAACCAAACTTGCTTCATGAAACTTCTCCTTGCTCTCCAATACCTCTTCCCCATTTTCCAATGGGCCCCTCTCTACAACCTTTCTCTTCTCCGCTCTGACATGATCTCAGGTCTCACCATTGCAAGCCTCGCCATTCCTCAGGGTATCAGCTATGCTAAGCTAGCAAACTTGCCACCCATTCTTGGATTATATTCTAGTTTTGTGCCTCCGTTGATATATTCCTTGCTTGGGAGTTCTAGACATCTGGGTGTTGGTCCAGTTTCAATTGCATCTTTAGTCATGGGATCAATGTTAACAGAGACAATATCTTATACTCAAGATCCTATTCTCTATCTCAAAATGGCTTTCACTGCCACTTTTTTTGCTGGTTTGTTCCAATCTTCTCTGGGTATATTAAGGTTAGGCTTTGTGATTGATTTTCTCTCAAAGGCAACTCTGGTAGGTTTCATGGCTGGTGCAGCGATTATTGTGTCACTGCAGCAGCTGAAAGGGTTGCTTGGAATAGTTCATTTCACCAACAAGATGCAAATAACGCCTGTGCTTATCTCTGTTTTCAAGCAAAGAGAAGAGTGGTCATGGCAAAACCTTCTGCTGGGATTCAGTTTCCTGCTATTCCTGTTGACAACAAGGCACATTAGCTTGAGGAAGCCAAAATTATTCTGGGTTTCAGCAGCTGCCCCGTTGATATCAGTCATTCTGTCAACCATTTTAGTATTTCTTCTGAGAAATAAGGCCCATAAAATTGCCATTATCGGTGAATTGCCAAAAGGACTGAATCCACCATCATCAAACATGTTATACTTCAATGGTCCTTATTTGGCTCTTGCTCTCAAAACAGGACTTGTCACTGGGATTTTGTCTCTCACTGAAGGAATTGCAGTGGGAAGAACATTTGCTGCACTGAAGAACTACCAGGTGGATGGAAACAAAGAAATGATGGCCATTGGTCTTATGAACATAGCTGGTTCTTGTTCTTCATGCTATGTCACAACAGGGTCATTTTCTCGATCAGCTGTTAACTTCAATGCTGGGGCAGAGACAGCAGTATCAAATATAATCATGGCATCGGCTGTTCTTGTGACCCTTTTGTTTCTGATGCCGCTGTTCTATTACACACCGAATGTAGTCTTAGGAGCCATTATAATCACTGCTGTTGTAGGGCTAATAGATTATCAAGCTGCATATAAATTGTGGAAGGTTGACAAGCTTGACTTCTTGGCCTGCTTGTGCTCCTTTTTCGGTGTTCTGTTCATTTCAGTGCCTCTTGGCCTTGGAATAGCGGTGGGAATATCAGTCTTCAAGATCTTGCTTCATGTCTCTAGGCCAAACACACTGGTTTTGGGGAATATACCGGGGACGCCAATATTCCACAACCTAAACCAATATAGAGAAGCTTTGAGGATTCCTTCGTTTATCATTTTGGCTGTTGAGTCTCCCATCTACTTTGCTAATTCAACGTACCTGCAAGAAAGGATACTGAGATGGGTTCGAGAAGAGGAAGAACGAGTAAAAGCAAACAATGAAAGTACATTGAAGTGTATAATTTTGGACATGACGGCTGTTACAGCCATAGACACAAGTGGAATCGATACTCTATGTGAACTTAGGAAGGTGCTGGACAAAAGATCACTTCAGCTTGTGTTGGCAAATCCTGTTGGGAATGTGATGGAAAAGTTGCATCAGTCAAATATTTTGGATTCCTTTGGGTTGAAAGGTGTCTATCTCACTGTTGGAGAAGCTGTGGCTGACATTTCATCTTCATGGAAAGCTCAGCCTTGA 1986 0.4285 MGVNFNRVEDIACNNGCSMKIQSDTEMAMPVPAMEIHKVQLPPERTTLQKLRHRLSEIFFPDDPLHRFKNQTCFMKLLLALQYLFPIFQWAPLYNLSLLRSDMISGLTIASLAIPQGISYAKLANLPPILGLYSSFVPPLIYSLLGSSRHLGVGPVSIASLVMGSMLTETISYTQDPILYLKMAFTATFFAGLFQSSLGILRLGFVIDFLSKATLVGFMAGAAIIVSLQQLKGLLGIVHFTNKMQITPVLISVFKQREEWSWQNLLLGFSFLLFLLTTRHISLRKPKLFWVSAAAPLISVILSTILVFLLRNKAHKIAIIGELPKGLNPPSSNMLYFNGPYLALALKTGLVTGILSLTEGIAVGRTFAALKNYQVDGNKEMMAIGLMNIAGSCSSCYVTTGSFSRSAVNFNAGAETAVSNIIMASAVLVTLLFLMPLFYYTPNVVLGAIIITAVVGLIDYQAAYKLWKVDKLDFLACLCSFFGVLFISVPLGLGIAVGISVFKILLHVSRPNTLVLGNIPGTPIFHNLNQYREALRIPSFIILAVESPIYFANSTYLQERILRWVREEEERVKANNESTLKCIILDMTAVTAIDTSGIDTLCELRKVLDKRSLQLVLANPVGNVMEKLHQSNILDSFGLKGVYLTVGEAVADISSSWKAQP 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium922g00027 661 ProSitePatterns SLC26A transporters signature. 128 149 IPR018045 GO:0008271|GO:0008272
Vium922g00027 661 Gene3D STAS domain 510 655 IPR036513 -
Vium922g00027 661 NCBIfam sulfate permease 86 649 IPR001902 GO:0016020|GO:0055085
Vium922g00027 661 SUPERFAMILY SpoIIaa-like 535 652 IPR036513 -
Vium922g00027 661 CDD STAS_SulP_like_sulfate_transporter 531 646 - -
Vium922g00027 661 ProSiteProfiles STAS domain profile. 530 653 IPR002645 -
Vium922g00027 661 Pfam STAS domain 531 649 IPR002645 -
Vium922g00027 661 Pfam Sulfate permease family 99 478 IPR011547 GO:0016020
Vium922g00027 661 PANTHER SULFATE TRANSPORTER 50 653 IPR001902 GO:0016020|GO:0055085
Vium922g00027 661 FunFam Sulfate transporter 31 510 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium922g00027 Vium-Chr922 161442 166461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium922g00027 1 661 Inorganic Solute Cotransporters AT3G15990 73.946 0.0 1021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium922g00027 K17471 - gmx:100817604 1189.48