Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium922g00023 ATGAGTGTGGTGGGTTTTGATTTCGGTAATGAGAGCTGCGTTGTTGCAGTTGCGAGGCAAAGAGGGATTGACGTTGTGCTTAATGATGAGTCCAAACGTGAAACGCCTGCTATTGTGTGTTTTGGTGAGAAGCAACGTTTCATTGGCACTGCTGGTGCTGCCTGCCGTCTGATGAACCCTAAGAATTCAATATCAGAGTTTAAGAGACTCATTGGCAGAAAATTCTCTGATCCTGAATTGCAACGGGATCTTAAGTCACTGCCATTTCTTGTTACCGAGGGGAATGATGGGTACCCGTTGATTCACGTGCAATACTTGGGTGAGGCTAAGAAATTTACACCTACACAAGTGTTTGGTATGATGTTGTCGAATCTTAAGGAAATTGCAGAGAACAACCTCATTACGGCTGTTGTTGATTGTTGCATTGGAATTCCGGTTTATTTTACTGATTTGCAGAGACGGGCGGTGTTGGATGCGGCCACGATTGTTGGTCTACACCCGCTTCAATTGATTCATGAAATGACTGCCACTGCCTTGGCGTATGGGATTTATAAAACGGACCTTCCAGAAAACGATCAACTGAATGTTGCTTTTGTTGATGTTGGGCATGCTAGCATGCAAGTCTGTATTGCTGGATTCAAGAAGGGGCAGTTGAAAGTGTTGGCTCATTCGTATGATAGGTCTTTAGGTGGTAAGGATTTTGACGAGGTTTTGTTCCATCACTTTGCTACTAAGTTCAAGGAGGAGTATAAGATTGATGTTTTCCAGAATGCTAGGGCTTGCTTAAGGTTGAGGGCTGCCTGTGAGAAGATGAAGAAGATGCTTAGTGCAAATAGTGAGGCACCTCTCAACATTGAGTGTTTGATGGATGAGAAGGATGTTCGTGGCTTCATGAAGCGAGATGATTTTGAGCAATTAAGTCTTCCAATTTTGGAACGTGTCAGGGGACCTTTGGATAAGGCACTTGCTGAAGCAAATCTTACCATTGAAAATGTGCATATGGTTGAGGTGGTTGGTTCAGGTTCTCGTGTACCCGCCATAACCAAAATATTGACAGAGTTTTTCAAGAAAGAGCCTAGGCGAACAATGAATGCTAGTGAGTGTGTTGCCAAGGGTTGTGCTTTGAAATGTGCAATTCTTAGTCCCACGTTTAAAGTACGAGAATTTCAGGTCAATGAAAGCCTTCCTTTCTCGATTTCCCTTGCATGGAAAGGTACTGGTCCGGATGCACAGGAGAATGCACCACAAAATCAGCAGAGTTCCCTTGTTTTTCCCAAGGGTAATCCCATACCAAGTATCAAAGCTCTAACATTCTACAGGTCAGGAACATTTTCTATTGATGTACATTACGGCGATGTAAGTGAGCTGCAAACACCTACCAAGATTAGCACATATACTATTGGTCCGTTCCAAACTGCAAATAGTGAAAGGACAAAAGTGAAAGTGAAAGTTCGTTTGAATATTCATGGAATTGTATCTCTAGAGTCCGCCATGCTCCTGGAAGAAAACGAAGTTGAGGTTCCGATTACCAAAGAATCAGCAGGGGAAAATACTAAGCCAAACATCAACGAAGCCCCAATTGAGGCTGCTACACCTCCAACCTCCAATGACACTAGTGAAAATGTGCAAGATGCAAAGGTTAGCACTGATGCTTCGGGGGGTGAAAATGGTGTTCCTCAGAATGAAGATAAGCCTCTGCAAACAAATACTGATACCAAGGCTCCAAAGAAAAAGGTTAAAAAAACAAGCATTGTTGTATCAGAGTTAGTTTATGGAGCAATGGTCTCTTTGGATGTCCAAAAGGCAATAGAGAAGGAGTTTGAAATGGCTTTGCAAGATCGTGTGATGGAGGAAACGAAGGACAAGAAAAATGCAGTTGAGGCTTATGTTTATGACATGAGAAACAAGCTTAATGACAAATACCAAGAGTTTGTCATTGCTTCAGAGAGAGAAGATTTTACTGCCCAACTCCAGGAAGTGGAAGATTGGCTTTATGATGAGGGTGAAGATGAAGCTAAAGGTGTATATATTGCTAAGCTTGAACAACTAAAAAAGCAAGGTGATCCAATTGAAGGACGTTACAGAGAATACATGGAGAGGGGTAATATAATTGAGCAATTCATGTATTGTATAAATAGTTATAGAGAAGCTGCAAAGTCGAAGGACCCCAAATTTGATTACATTGACATTAACGAGAAACAGAAGGTCGTAAATGAATGTGTTGAAGCTGAGAAATGGTTTATGGAGAAGCAACAACTACAAAGCTCACTTCCAAAATATATCAACCCTGTACTCTTGTCAGCTGAAATTAGAAAGAAAGCTGAGATTGTTGATAGATTCTGCAAGCCAATTATGACAAAACCAAGGCCAACCAAACCAACTTCTTCCACTGGATCAGGAGCCCCATCTCCTCACGGTGATGAGAAGCAACACCCTCGAGGGAATGCTAATGCCAGCAGTAACGAAAATACTGGGGATAGAAGTAGCCAGGCTGCATCAGCTTCTCCTGAACCAATGGAGACTGATAACTCTGAGAACGCAGGCTCTGCATAA 2553 0.423 MSVVGFDFGNESCVVAVARQRGIDVVLNDESKRETPAIVCFGEKQRFIGTAGAACRLMNPKNSISEFKRLIGRKFSDPELQRDLKSLPFLVTEGNDGYPLIHVQYLGEAKKFTPTQVFGMMLSNLKEIAENNLITAVVDCCIGIPVYFTDLQRRAVLDAATIVGLHPLQLIHEMTATALAYGIYKTDLPENDQLNVAFVDVGHASMQVCIAGFKKGQLKVLAHSYDRSLGGKDFDEVLFHHFATKFKEEYKIDVFQNARACLRLRAACEKMKKMLSANSEAPLNIECLMDEKDVRGFMKRDDFEQLSLPILERVRGPLDKALAEANLTIENVHMVEVVGSGSRVPAITKILTEFFKKEPRRTMNASECVAKGCALKCAILSPTFKVREFQVNESLPFSISLAWKGTGPDAQENAPQNQQSSLVFPKGNPIPSIKALTFYRSGTFSIDVHYGDVSELQTPTKISTYTIGPFQTANSERTKVKVKVRLNIHGIVSLESAMLLEENEVEVPITKESAGENTKPNINEAPIEAATPPTSNDTSENVQDAKVSTDASGGENGVPQNEDKPLQTNTDTKAPKKKVKKTSIVVSELVYGAMVSLDVQKAIEKEFEMALQDRVMEETKDKKNAVEAYVYDMRNKLNDKYQEFVIASEREDFTAQLQEVEDWLYDEGEDEAKGVYIAKLEQLKKQGDPIEGRYREYMERGNIIEQFMYCINSYREAAKSKDPKFDYIDINEKQKVVNECVEAEKWFMEKQQLQSSLPKYINPVLLSAEIRKKAEIVDRFCKPIMTKPRPTKPTSSTGSGAPSPHGDEKQHPRGNANASSNENTGDRSSQAASASPEPMETDNSENAGSA 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium922g00023 850 MobiDBLite consensus disorder prediction 789 803 - -
Vium922g00023 850 FunFam Heat shock 70 kDa protein 4 1 73 - -
Vium922g00023 850 MobiDBLite consensus disorder prediction 813 850 - -
Vium922g00023 850 MobiDBLite consensus disorder prediction 510 578 - -
Vium922g00023 850 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 591 IPR029047 -
Vium922g00023 850 FunFam Heat shock 70 kDa protein 4 230 313 - -
Vium922g00023 850 CDD HSPA4_like_NDB 2 381 - -
Vium922g00023 850 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Vium922g00023 850 MobiDBLite consensus disorder prediction 528 568 - -
Vium922g00023 850 Gene3D - 5 374 - -
Vium922g00023 850 Gene3D - 596 705 IPR029048 -
Vium922g00023 850 Pfam Hsp70 protein 3 694 IPR013126 GO:0005524|GO:0140662
Vium922g00023 850 Gene3D - 38 113 - -
Vium922g00023 850 FunFam Heat shock 70 kDa protein 4 107 207 - -
Vium922g00023 850 Gene3D - 186 360 - -
Vium922g00023 850 PANTHER HSC70CB, ISOFORM G-RELATED 1 842 - -
Vium922g00023 850 MobiDBLite consensus disorder prediction 781 850 - -
Vium922g00023 850 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 384 627 IPR029047 -
Vium922g00023 850 SUPERFAMILY Actin-like ATPase domain 195 380 IPR043129 -
Vium922g00023 850 FunFam Heat shock 70 kDa protein 4 38 113 - -
Vium922g00023 850 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 598 694 IPR029048 -
Vium922g00023 850 PRINTS 70kDa heat shock protein signature 2 15 - -
Vium922g00023 850 PRINTS 70kDa heat shock protein signature 140 160 - -
Vium922g00023 850 PRINTS 70kDa heat shock protein signature 363 383 - -
Vium922g00023 850 PRINTS 70kDa heat shock protein signature 30 42 - -
Vium922g00023 850 PRINTS 70kDa heat shock protein signature 332 348 - -
Vium922g00023 850 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 710 790 IPR029048 -
Vium922g00023 850 Gene3D Actin; Chain A, domain 4 230 313 - -
Vium922g00023 850 FunFam Heat shock 70 kDa protein 4 594 704 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium922g00023 Vium-Chr922 141813 147086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium922g00023 4 405 Calmodulin-binding Proteins AT1G16030 36.296 6.03e-82 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium922g00023 K09489 - gmx:100816539 1400.19