Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium922g00008 ATGTCGTCTCCGTCGCCGGCGGAGACTCCTTCCGGCACGAACTTCACTACCTCTCCTCCTCCTCCTCCTCCGGATGAAACACCTCTCGTACCTAATGCCACTGTCTCCCCTCCTCCGCCTCCCGACATCACCAGTGCCGCCGCTAGTCCTCCTCCGCCGTTAGCCGCAGCTCCGTCGAGTCTCAGTGGCGGCGGGTTGTCGCCGGCTACATTGAGTGGAATAATTATAGGAGCCGTGTTAGGTGCAGTTGGTATGCTTATAGTTGGGGGCGTTTTCTTTTGCGTCTATAGGAATTGGAAAAAGAAGAGAAGCCAGAACAACTACTCTCAACCGTCCCAACCGAAAGTTGACATGGCTGGTGTTTCTCCAACGCCAGATGGAAAAGTAGGCTTGTCCAAGCCTACTCCAGGGGGTTTAGGGAATCAGAAACTGTCATCCTCTGGTCTCCCCACACCCACTGTCAATTCCTCAGGCACTGCAAGTAGTTGGGGTTCCGAGAAGGTGAAGCCTTCACCTGGCATTTCCTTGGCGCTATCTCAAAGCAGTTTTACACACGATGAATTAGTTATGGCAACGGATGGATTCTCCTACTCAAATCTTCTTGGTCAAGGTGGTTTTGGCTATGTCCACAAAGGAGTTCTCCCAAATGGGAAAATTGTTGCAGTCAAGCAGTTGAAATCTGAGAGTAGACAAGGGGAGCGTGAGTTCCATGCAGAAGTCGATGTCATTAGCCGTGTGCATCACAGACACCTTGTTTCCCTTGTTGGTTACTGCATATCAGACAACCAGAAGATGCTTGTCTACGAGTATGTGCCAAATAATACTCTAGAATTTCATTTGCATGGAAAAGACAGACCACCTATGGACTGGTCAACAAGGATGAAGATTGCTATAGGATCTGCAAAAGGATTGGCATATCTGCATGAAGACTGTAATCCCAAAATCATACACCGAGACATCAAGGCATCTAACATTCTTATTGATGATAGCTTTGAGGCTAAGGTTGCAGATTTTGGACTTGCAAAGTTTTCATCAGACACAGAAACACATGTTTCTACTCGAGTGATGGGAACTTTTGGATACATGGCTCCAGAATATGCTGCTAGTGGGAAACTAACAGAAAAGTCAGATGTTTTCTCCTTTGGTGTTGTGCTGTTGGAGTTGATTACTGGACGGAAACCCGTTGATAAAACTCATCCCTTCTTAGATGACAGCATGGTTGAATGGGCTAGGCCTTTACTCTCTCAAGCGTTTGAGAATGGAAACTTTGATGGACTTCTTGATCCAAAGTTGCAGAAAAATTACAATCATGATGAGATGATTCGAATGGCCGCTTGTGCTGCAAGTTGTGTGCGCCATTCAGCCAGGCTTCGGCCTCGAATGAGCCAGGTTGTTCGAGCTCTGGAAGGAAATATTTCTCTAGAAGATCTAAATGAGGGGAGTGCTCCTGGACACAGCAGAGTTTTTGGTTCCTTTGAGGGTTCTAGCTATGACAGCGTCCAATACAGTGAGGACATGAAGAACTTCAGGAAGCTGACAGTGGAAAGCCAAGAGCAAGGTATTAGTGAGTACAGTGGTCCCAGCAGTGATTACGGTCGACATCCATCTGTCTCTACCAGTTCGGGACAGCAAAATACGCAGGAAATTGAATTGGGGGAACGTGAACGGTAG 1671 0.474 MSSPSPAETPSGTNFTTSPPPPPPDETPLVPNATVSPPPPPDITSAAASPPPPLAAAPSSLSGGGLSPATLSGIIIGAVLGAVGMLIVGGVFFCVYRNWKKKRSQNNYSQPSQPKVDMAGVSPTPDGKVGLSKPTPGGLGNQKLSSSGLPTPTVNSSGTASSWGSEKVKPSPGISLALSQSSFTHDELVMATDGFSYSNLLGQGGFGYVHKGVLPNGKIVAVKQLKSESRQGEREFHAEVDVISRVHHRHLVSLVGYCISDNQKMLVYEYVPNNTLEFHLHGKDRPPMDWSTRMKIAIGSAKGLAYLHEDCNPKIIHRDIKASNILIDDSFEAKVADFGLAKFSSDTETHVSTRVMGTFGYMAPEYAASGKLTEKSDVFSFGVVLLELITGRKPVDKTHPFLDDSMVEWARPLLSQAFENGNFDGLLDPKLQKNYNHDEMIRMAACAASCVRHSARLRPRMSQVVRALEGNISLEDLNEGSAPGHSRVFGSFEGSSYDSVQYSEDMKNFRKLTVESQEQGISEYSGPSSDYGRHPSVSTSSGQQNTQEIELGERER 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium922g00008 556 ProSitePatterns Serine/Threonine protein kinases active-site signature. 315 327 IPR008271 GO:0004672|GO:0006468
Vium922g00008 556 MobiDBLite consensus disorder prediction 104 168 - -
Vium922g00008 556 FunFam Proline-rich receptor-like protein kinase PERK1 271 479 - -
Vium922g00008 556 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 86 514 IPR047117 -
Vium922g00008 556 MobiDBLite consensus disorder prediction 138 168 - -
Vium922g00008 556 MobiDBLite consensus disorder prediction 1 63 - -
Vium922g00008 556 MobiDBLite consensus disorder prediction 513 548 - -
Vium922g00008 556 Gene3D Phosphorylase Kinase; domain 1 159 270 - -
Vium922g00008 556 FunFam Proline-rich receptor-like protein kinase PERK8 167 270 - -
Vium922g00008 556 SUPERFAMILY Protein kinase-like (PK-like) 170 468 IPR011009 -
Vium922g00008 556 MobiDBLite consensus disorder prediction 15 57 - -
Vium922g00008 556 MobiDBLite consensus disorder prediction 511 556 - -
Vium922g00008 556 SMART serkin_6 195 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium922g00008 556 ProSiteProfiles Protein kinase domain profile. 195 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium922g00008 556 Pfam Protein tyrosine and serine/threonine kinase 198 467 IPR001245 GO:0004672|GO:0006468
Vium922g00008 556 Gene3D Transferase(Phosphotransferase) domain 1 271 480 - -
Vium922g00008 556 ProSitePatterns Protein kinases ATP-binding region signature. 201 223 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium922g00008 Vium-Chr922 37285 42162 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium922g00008 39 542 Trihelix Transcription Factor Family AT1G70460 51.367 4.59e-162 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vium922g00008 PK_Tyr_Ser-Thr 4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium922g00008 - - ccaj:109808169 820.461