Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium922g00001 ATGGGAGTTAACATGTCAAACACACCACCTCACACCAAAGACTTGTTTTCTTCTCCAACTCTCTCTCTTAGCCTAGCTGGGATTTTCCGGCATGCCGAGGAGGCGGCGACGACGTCCGGCATGGTGGTTGACGGCGTTGAGGTCCGGCGAGAGGACACTGTTGAGATTAGCAGTGACAACTCAGGACCTGTGAGATCCAGGTCAGAAGAAGATTTTGATGGAGAAGGTGCTCATGAGGAAGACGATGATGAGAACAACGATGATGGTGATAGGAGTAAGAAGAGGAAGAGGAAGTATCACAGACACACCGTTGAACAGATCAGAGAAATGGAAGCGCTTTTCAAGGAATCACCACATCCTGATGAAAAGCAGAGGCAACAACTCAGCCAGCAACTTGGCCTTGCTCCAAGGCAAGTCAAGTTTTGGTTCCAAAATCGTCGAACGCAAATCAAGGCAATACAAGAGCGCCATGAAAACTCATTGTTGAAGACAGAATTAGACAAACTGAAGGAAGAAAACAAGGCCATGCGAGAGATCATCAGCAAATCTTGTTGCCCCAATTGTGGCATGGTAACGGCTTCCATAGATGCTTCCATGTCCATTGAAGAAAAGCAACTCCTTATTGAAAATGTCAAACTCAAAGCTGAGGTAGAGAAACTCCGAGCAACATTAGGAAAATGTTCACCAACGTCTCCTGCATCTTCTGCTGGTCATGACGAGGAAGAGAACAGAAGCTCTTTGGACTTTTACAATGGAGTTTTTGGGCTCGAGAAATCAAGGATAATGGAAATAGTTAACCGGGCAACTGAAGAGCTCATAAAGATGGCAAACATGGGAGAACCATTGTGGGTTCGTAGCGTTGAAACAAGTCGGGAAATACTTAACTATGATGAATATGTGAAGGAGTTCGCAGTTAAAAATTCGAGCAGTGATAAGCCAAAGACATTCATCGAAGCCTCGAGAGACTCCGAGGTTGTTTTTATGGATCTCCCTCATCTACTCCAAACCTTTCTAGATGTGAATCAGTGGAAGGAAATGTTTCCATGCTTGATATCAAAGGCTGCCACTGTTGATGTTATATGCAATGGAGAAGGTTCCAACAGGAATGGTGCAGTGCAATTGATGTTTGCTGAGCTGCAAATGCTCACTCCAATGGTGCCCACCAGAGAAGTGTATTTTGTGAGGTGCTGCAAACAGCTGAGTGATGAACAGTGGGCAATAATTGATGTATCTATAGACAAAGTTGAACACAACATTGACGCATCCCTTGAGAAATGCAGAAAACGCCCATCTGGTTGCATTATTGAGGATAAGTCAAACGGCCACTGCAAGGTGATATGGGTGGAGCACTTGGAGTGCCAGAAGAGCACAATCCACACATTGTACCGAACCATTGTCAACAGTGGTCTAGCTTTTGGGGCAAGGCATTGGATAACCACACTACAACTTCAATGCGAGCGTCTGGTTTTTAACATGGCAACAAATGTTCCTACAAAGGATTCAACTGGTGTTGCAACGTTGGCCGGGAGGAAAAGCATTTTAAAGTTGGCACAAAGAATGACATGGAGTTTCTGCCATGCAATTGGTGCATCAAGTTTCCATACGTGGACCAAGTTCACGAGTAAAACAGGAGAAGACATAAGGATTAGCTCTAGGAAGAACTTGAATGACCCTGGTGAACCTCTTGGGGTTATCTTGTCTGCAGTTTCTTCTGTGTGGCTTCCTGTCTCTCCCAATGCACTGTTTGATTTCTTGAGGGATGAAGCTCGTCGAAGTGAGTGGGATATGATGTCCTGTGGTGGGTCAGTGCAGTCTATTGCAAATTTAGCTAAAGGAAAAGGCCGAGGCAATGCTGTAAACATCCATAAAATTGAATCAACAGAGAACAGTGTGTGGGTACTGCAAGATAGCTGCACAAGTGGTTATGAATCAATGGTGGCATATGCTCTTGTGGATTTTGCTGGTCTTCAATCTGTGCTGACAGGATGTGATTCAAGCAATCTTACCATTTTGCCGTCAGGATTCTCAATTCTTCCTGATGGGGTTGAGGGAAGGCCATTGGTGATTAGGTCAAAGCAAGATGAAAAAGGAACAGAAGGAGGGTCTTTGTTTACAATGCTATTTCAGATGCTTGTCAATGCTTCTCCTACAGCCAAGTTAACTATGGAGTCTGTGGAATCTGCCACTAATCTTGTCTCTTGTACATTGAGAAACATTAGAACAAGTTTACAGTGTGAAGATGGTTAG 2247 0.4441 MGVNMSNTPPHTKDLFSSPTLSLSLAGIFRHAEEAATTSGMVVDGVEVRREDTVEISSDNSGPVRSRSEEDFDGEGAHEEDDDENNDDGDRSKKRKRKYHRHTVEQIREMEALFKESPHPDEKQRQQLSQQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKTELDKLKEENKAMREIISKSCCPNCGMVTASIDASMSIEEKQLLIENVKLKAEVEKLRATLGKCSPTSPASSAGHDEEENRSSLDFYNGVFGLEKSRIMEIVNRATEELIKMANMGEPLWVRSVETSREILNYDEYVKEFAVKNSSSDKPKTFIEASRDSEVVFMDLPHLLQTFLDVNQWKEMFPCLISKAATVDVICNGEGSNRNGAVQLMFAELQMLTPMVPTREVYFVRCCKQLSDEQWAIIDVSIDKVEHNIDASLEKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSTIHTLYRTIVNSGLAFGARHWITTLQLQCERLVFNMATNVPTKDSTGVATLAGRKSILKLAQRMTWSFCHAIGASSFHTWTKFTSKTGEDIRISSRKNLNDPGEPLGVILSAVSSVWLPVSPNALFDFLRDEARRSEWDMMSCGGSVQSIANLAKGKGRGNAVNIHKIESTENSVWVLQDSCTSGYESMVAYALVDFAGLQSVLTGCDSSNLTILPSGFSILPDGVEGRPLVIRSKQDEKGTEGGSLFTMLFQMLVNASPTAKLTMESVESATNLVSCTLRNIRTSLQCEDG 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium922g00001 748 SMART HOX_1 95 157 IPR001356 GO:0003677
Vium922g00001 748 FunFam Homeobox-leucine zipper protein GLABRA 2 263 486 - -
Vium922g00001 748 Coils Coil 152 179 - -
Vium922g00001 748 Pfam START domain 264 487 IPR002913 GO:0008289
Vium922g00001 748 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 93 743 IPR042160 -
Vium922g00001 748 Coils Coil 203 223 - -
Vium922g00001 748 CDD START_ArGLABRA2_like 258 486 - -
Vium922g00001 748 SMART START_1 263 487 IPR002913 GO:0008289
Vium922g00001 748 Gene3D - 81 165 - -
Vium922g00001 748 SUPERFAMILY Bet v1-like 517 736 - -
Vium922g00001 748 Gene3D - 307 486 IPR023393 -
Vium922g00001 748 ProSitePatterns 'Homeobox' domain signature. 128 151 IPR017970 GO:0000981|GO:0006355
Vium922g00001 748 SUPERFAMILY Homeodomain-like 85 154 IPR009057 -
Vium922g00001 748 SUPERFAMILY Bet v1-like 256 487 - -
Vium922g00001 748 FunFam Homeobox-leucine zipper protein HDG1 80 169 - -
Vium922g00001 748 Pfam Homeodomain 96 151 IPR001356 GO:0003677
Vium922g00001 748 ProSiteProfiles START domain profile. 254 490 IPR002913 GO:0008289
Vium922g00001 748 ProSiteProfiles 'Homeobox' domain profile. 93 153 IPR001356 GO:0003677
Vium922g00001 748 CDD homeodomain 96 151 IPR001356 GO:0003677
Vium922g00001 748 MobiDBLite consensus disorder prediction 50 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium922g00001 Vium-Chr922 9541 15385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium922g00001 56 747 Homeobox Transcription Factor Family AT1G79840 65.906 0.0 906
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium922g00001 START 4.8e-55 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium922g00001 K09338 - gmx:100806193 1261.9