Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9200g00001 ATGGCGACGAGAGCAGCAGTGGCGGCGCCACGCGTTTTGCGACGCTTTTTCTGCTCAAACTCTGCTTCTTCTACTTTCCCTTTCGTTCCTACGCCGCCTGCGGGCGCTGTCGCCACTCCTGCACGACCCACGGCGGAGCCCAACACCAATCTCTTTGTCTCTGGGCTTAGCAAACGGACTACAACAGAAAAGCTTCGGGAAGAATTTTCAAAGTTTGGTGAAGTCGTTTATGCAAGGGTGGTAGCTGATCGAGTCTCAGGCTACTCTAAGGGGTTTGGTTTTGTGCAATATGCAACAATAGAAGATGCTGCAAAGGGCATTGAAGGAATGGATGGCAAGTTTTTGGACGGTTGGGTTATATTTGCAGAGTATGCTAGACCAAGACCACCTCCAGCACATCTAAATAACAACAGTCCTCCGTTTGGCCGGCAGTGA 435 0.508 MATRAAVAAPRVLRRFFCSNSASSTFPFVPTPPAGAVATPARPTAEPNTNLFVSGLSKRTTTEKLREEFSKFGEVVYARVVADRVSGYSKGFGFVQYATIEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPAHLNNNSPPFGRQ 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9200g00001 144 FunFam RNA recognition motif-containing protein 28 139 - -
Vium9200g00001 144 SMART rrm1_1 50 123 IPR000504 GO:0003723
Vium9200g00001 144 Gene3D - 30 136 IPR012677 -
Vium9200g00001 144 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Vium9200g00001 144 PANTHER NUCLEOLAR PROTEIN 8 20 137 - -
Vium9200g00001 144 SUPERFAMILY RNA-binding domain, RBD 41 139 IPR035979 GO:0003676
Vium9200g00001 144 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 117 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9200g00001 Vium-Chr9200 3968 8432 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9200g00001 20 129 Eukaryotic Initiation Factors Gene Family AT4G34110 30.909 9.88e-08 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9200g00001 - - gmx:100789351 225.713