LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium9197g00003	AAAGNTTCTTCTGTATATCACCGCGCGGAATATGCTGTAGACGATTTCCCTTACGAAGAAGGGTCTAAAGGGAACGCCGAGGAAGGACTCGAGATCGCGAAGCTCGGAATCTCTCAGGATATTGTCTCAGCTTTGGCCAAGAAAGGCATCACCAAGCTCTTCCCCATTCAGAGGGCCGTGCTGGAACCTGCCATGCAAGGTCGTGATATGATTGGTCGAGCTAGGACTGGAACTGGGAAGACTCTTGCATTTGGGATACCCATCATGGATAAGATCATTCAGTTTAATGCGAAGCATGGGCGGGGGAGGGATCCTTTGGCTTTAGTTCTGGCTCCAACTAGGGAGCTTGCTAAGCAGGTTGAGAAGGAATTCTATGAGTCGGCACCTAACTTGGATACAATTTGTGTTTATGGGGGTACGCCAATCTCTAAGCAGATGAGGCAGCTCGATTATGGGGTTGATATTGCTGTGGGAACACCTGGTCGGATTATTGACCTTCTCAACAGAGGTGCTCTAAATCTGAAGGAAGTTCAATTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAATCGGCTTCCAGGAGGAAGTGGAGAGGATCTTGGAAAGGTTGCCCGCCAAACGTCAGACTCTTATGTTCTCTGCAACAATGCCATCTTGGATAAAGCAGATTTCACGCAATTACCTGAATGATCCCCTGACAATTGATCTAGTTGGAGATTCTGATCAGAAGTTAGCAGATGGAATTTCACTGTATTCCATTGCATCTGACTTATATGTTAAAGCGGGAATTCTTGCGCAGCTAATAACAGAACATGCAAAAGGAGGAAAGTGTATTGTTTTCACTCAAACAAAACGTGATGCAGACCGATTATCATATACCATGGCAAAAAGTGTTCAATGTGAGGCTTTGCACGGAGACATATCACAAGCTCAGAGGGAAAAAACTCTTGCTGGCTTCAGAAATGGCCATTTTAATGTTTTGGTGGCAACTGATGTTGCCTCACGTGGGCTTGATATACCCAATGTTGATCTTGTAATACATTATGATCTTCCCAATTCTTCAGAAATATTTGTTCATAGATCTGGACGGACAGGTCGTGCTGGTAAGAAAGGAACTGCTATTCTTGTGTATACAGAAGATCAATCAAGGGCTGTGAGGCTTATTGAGCGTGATGTGGGAAGTAGATTTACAGAGCTACCAAGGATAGCTGTTGATAGTGCATCCATGGACACAGTTGGCATGGGTGGTGGGCGGTTTGGGTCTTTCGGAGGAACTAGGGATCGTCGTTATGGTGACACAGGTTTTGGCCGTGGTCCTGGGTCTGGCCGTTCTGGTGGCTACAATAACAGTGGATTTGGCCGCCCCAGCTTTGGAGATTCTGGTGAAAGGTTTGGTGGACAGAATTATAATCGTTTTGGTGGCTCTGGTTCCAGTCAATCAGGAGGGGGGTTTTCTGGTGAAATGAGTAGATATGGTGGACCAAGCTCTGGTAGGTTTGGCTCATCTGGTGGCTTTGGCTCAGGTCAATCAGGAAGCAGATCTGGTCGATCATCCGGTGGGTCTAGGTTTAGTCGTCCAGATGATTTTGGGGGATTTGGTAGTTCAGATCGTTCGGGAGGTTTTGGAGAACTTGGCTCGGGTCAATCTAGTGGCTTTGGTGATTCTCGTGGTAGTAATCAGAACAATAGAAGACCTTTTTAA	1704	0.4607	KXSSVYHRAEYAVDDFPYEEGSKGNAEEGLEIAKLGISQDIVSALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGRDPLALVLAPTRELAKQVEKEFYESAPNLDTICVYGGTPISKQMRQLDYGVDIAVGTPGRIIDLLNRGALNLKEVQFVVLDEADQMLQIGFQEEVERILERLPAKRQTLMFSATMPSWIKQISRNYLNDPLTIDLVGDSDQKLADGISLYSIASDLYVKAGILAQLITEHAKGGKCIVFTQTKRDADRLSYTMAKSVQCEALHGDISQAQREKTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHYDLPNSSEIFVHRSGRTGRAGKKGTAILVYTEDQSRAVRLIERDVGSRFTELPRIAVDSASMDTVGMGGGRFGSFGGTRDRRYGDTGFGRGPGSGRSGGYNNSGFGRPSFGDSGERFGGQNYNRFGGSGSSQSGGGFSGEMSRYGGPSSGRFGSSGGFGSGQSGSRSGRSSGGSRFSRPDDFGGFGSSDRSGGFGELGSGQSSGFGDSRGSNQNNRRPF	567

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium9197g00003	567	MobiDBLite	consensus disorder prediction	542	567	-	-
	Vium9197g00003	567	PANTHER	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	22	407	-	-
	Vium9197g00003	567	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	61	235	IPR014001	-
	Vium9197g00003	567	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	264	408	IPR001650	-
	Vium9197g00003	567	CDD	SF2_C_DEAD	261	378	-	-
	Vium9197g00003	567	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	30	58	IPR014014	GO:0003724
	Vium9197g00003	567	SMART	helicmild6	289	369	IPR001650	-
	Vium9197g00003	567	SMART	ultradead3	49	252	IPR014001	-
	Vium9197g00003	567	FunFam	ATP-dependent RNA helicase RhlE	21	238	-	-
	Vium9197g00003	567	CDD	DEADc	41	236	-	-
	Vium9197g00003	567	MobiDBLite	consensus disorder prediction	471	486	-	-
	Vium9197g00003	567	Pfam	DEAD/DEAH box helicase	54	223	IPR011545	GO:0003676\|GO:0005524
	Vium9197g00003	567	Gene3D	-	251	411	IPR027417	-
	Vium9197g00003	567	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	104	390	IPR027417	-
	Vium9197g00003	567	MobiDBLite	consensus disorder prediction	418	567	-	-
	Vium9197g00003	567	Pfam	Helicase conserved C-terminal domain	263	369	IPR001650	-
	Vium9197g00003	567	Gene3D	-	31	239	IPR027417	-
	Vium9197g00003	567	MobiDBLite	consensus disorder prediction	501	522	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium9197g00003	Vium-Chr9197	22390	26444	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium9197g00003	35	401	Eukaryotic Initiation Factors Gene Family	AT3G19760	32.546	8.82e-67	221

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium9197g00003	-		-	gmx:100786041	885.945