Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium918g00016 ATGACTTCTCTTTCTGCCCTAAATATCTCTCTGCAATATCCTCCTGCTCGCAGAGACGACACCGTCCTTGAAGATTACCATGGCGTCAAAATTGCCGATCCTTACCGATGGCTCGAAGACCCTGATGCGGAAGAAGTGAAAGAGTTCGTACAGGAACAGGTTAAACTGACGGATTCGGTTCTTCAAAAATGCGAAACGAGAGACAAGCTTAGGGAAGCGATAACGAAGCTTTTTGACCATCCTCGTTACCACGCGCCGTTTAGACGAGCGGATAAGTACTTCTACTTTCACAACACTGGGCTTCAGGCACAAGATATCCTTTATGTGCAGGAGAGTTTGGAGGGTGAGGCAGAGGTGTTACTCGATCCCAATGGCTTCAGTGAAGACGGAACTATGGCGCTGAGTACTCTGTCAGTAAGTTACTTGAGTGATGTAAAGTATGTTCTGCAAGTTAGAGACTTAAAAACAGAACCAACTACTTGGATTGATGTCGTCCAAGAGTCAGAAAAAGATGTACTTGAGTCAGCATGTGCTGTAAACGGCAACCAACTGATAGTGAGTTACTTGAGTGATGTAAAGTATGTTCTGCAAGTTAGAGACTTAAAAACAGGTTCCTTTCTGCACCAATTACCAATTGACATTGGCTCAGTTTCTGAAGTTTCCGGGCGGCGTGAAGATAGTGTGGTTTTCATTAGCTTTACAAGTTTTTTAACACCTGGTATCATCTACCAGTGTAACTTGGGAACAGAGATTCCTGATATGAGAATATTTCGTGAAATTGTTGTCCCAGGGTTTGATCGATCTGAATTTCATGTTAAACAGGATTTCGTGAGTAGTAAAGATGCTACCAAAATCCCAGTGTTCATTGTTGCGAAAAGGGATATTAATTTGGATGGTTCACATCCATGTTTATTATACGGATATGGTGGTTTTAACATCAGCATTACACCATATTTCAGTGTCAGTCGCATTGTAATCACAAGACATTTAGGTGTTGTTTTCTGCATAGCAAATATTCGTGGTGGTGGAGAATATGGGGAGGAATGGCACAAAGCAGGCTCGCTTGCAAGGAAGCAGAATTGCTTTGATGACTTTATTTCCGCAGCAGAATACCTTGTATCTACGGGTTATACTCAACCCAAAAAGTTATGTATTGAAGGTGGAAGCAATGGTGGACTTCTTGTTGGTGCTTGTATAAATCAGAGACCCGATTTATTTGGTTGCGCTCTAGCTCATGTTGGTGTTATGGACATGCTACGGTTCCACAAATTTACCATAGGTCATGCGTGGACCTCAGATTATGGTTGTTCAGAAAAGGAAGAAGAGTTTCATTGGCTAATCAAGTAA 1347 0.4209 MTSLSALNISLQYPPARRDDTVLEDYHGVKIADPYRWLEDPDAEEVKEFVQEQVKLTDSVLQKCETRDKLREAITKLFDHPRYHAPFRRADKYFYFHNTGLQAQDILYVQESLEGEAEVLLDPNGFSEDGTMALSTLSVSYLSDVKYVLQVRDLKTEPTTWIDVVQESEKDVLESACAVNGNQLIVSYLSDVKYVLQVRDLKTGSFLHQLPIDIGSVSEVSGRREDSVVFISFTSFLTPGIIYQCNLGTEIPDMRIFREIVVPGFDRSEFHVKQDFVSSKDATKIPVFIVAKRDINLDGSHPCLLYGYGGFNISITPYFSVSRIVITRHLGVVFCIANIRGGGEYGEEWHKAGSLARKQNCFDDFISAAEYLVSTGYTQPKKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRFHKFTIGHAWTSDYGCSEKEEEFHWLIK 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium918g00016 448 Gene3D alpha/beta hydrolase 253 448 IPR029058 -
Vium918g00016 448 PANTHER PROLYL ENDOPEPTIDASE 153 448 - -
Vium918g00016 448 Pfam Prolyl oligopeptidase family 317 446 IPR001375 GO:0006508|GO:0008236
Vium918g00016 448 SUPERFAMILY Peptidase/esterase 'gauge' domain 150 249 - -
Vium918g00016 448 Gene3D - 150 252 - -
Vium918g00016 448 SUPERFAMILY Peptidase/esterase 'gauge' domain 10 141 - -
Vium918g00016 448 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 357 376 IPR002470 GO:0004252|GO:0006508
Vium918g00016 448 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 302 320 IPR002470 GO:0004252|GO:0006508
Vium918g00016 448 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 329 353 IPR002470 GO:0004252|GO:0006508
Vium918g00016 448 PRINTS Prolyl oligopeptidase serine protease (S9A) signature 387 407 IPR002470 GO:0004252|GO:0006508
Vium918g00016 448 Gene3D alpha/beta hydrolase 5 149 IPR029058 -
Vium918g00016 448 ProSitePatterns Prolyl endopeptidase family serine active site. 364 394 IPR002471 GO:0004252|GO:0006508
Vium918g00016 448 Pfam Prolyl oligopeptidase, N-terminal beta-propeller domain 155 250 IPR023302 GO:0004252
Vium918g00016 448 Pfam Prolyl oligopeptidase, N-terminal beta-propeller domain 14 140 IPR023302 GO:0004252
Vium918g00016 448 SUPERFAMILY alpha/beta-Hydrolases 273 431 IPR029058 -
Vium918g00016 448 FunFam Prolyl endopeptidase 223 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium918g00016 Vium-Chr918 107873 117178 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium918g00016 331 434 Carbohydrate Esterase AT5G36210 34.906 2.72e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium918g00016 K01322 - gmx:100776544 574.318