Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium918g00015 ATGTCGTCTGTGCCGGAAACCTACGCCGGAGAAGACGGAAAACACTACCCTGCTCCACTCGCCCCTCATGACGACGTCGTCAGGGACTCCTCCCTCTTCTGGGACACTCTCAGACGCTTTCACTTTCTTATGGGTACCAAATTCATGATTCCTGTGATTGGAGGGAAGGAGCTGGATTTGCACGTTCTTTACGTGGAAGTTACCAGAAGAAGTGGCTATGAGAAGGTGGTTGCAGAGAAGAAATGGAGGGAAGTTGGAAGCGTTTTCAAGTTCTCAGCAACCACCACAAGTGCTTCTTTTGTGTTGAGGAAACATTACTTCAGTCTTCTCTATCATTACGAACAGGTTCACTTTTTCAAAGCTCGGGGTTCTGTCTATACTCCTTCAACAGATGCATTTTCCGGGAACAGTCCTTCTTGGAGACCTGAATTAGCTATCGTGGAATATTCTCCTAAGCCCTTGAATAGTAGTTCCGAATCCCGTGCCGAAGAAACATCATGTCTCTCAGGAAATGGAACTATAGAGGGAAAATTTGAGTGTGGTTATTTGGTATCAGTGAAACTGGGTTCAGAGGTTCTTAGAGGGGTGCTTTACCATCCAGAAAAAATGGTTGCTCCACCTTCGATTCCACAACACGAGAATGCCATTGTGCCGTTCAAAAGCAAAGGTCACCGTTCTGGTCGGAGGAGGAGAAACAAGAGAAGATGGGACCCTAACTATCCAAAGCCGAATAGGAGTGGCTATAACTTCTTCTTTGCTGAAAAGCATTACTCTCTCAAAGCTCTCTATCCCAACAGAGAAAGGGAGTTTACGAAGATGATTGGCCAGTCATGGAACAGTCTTAGTCCCGAAGAACGACTGGTTTATCAGAACATCGGATTAAGAGACAAAGAAAGGTACAAGAGAGAACTGACGGAGTACAAAGAGAGGATGAAGCTTAGGGAGACCCCAGAAGTTGGACTTCCATAG 969 0.4592 MSSVPETYAGEDGKHYPAPLAPHDDVVRDSSLFWDTLRRFHFLMGTKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGSVFKFSATTTSASFVLRKHYFSLLYHYEQVHFFKARGSVYTPSTDAFSGNSPSWRPELAIVEYSPKPLNSSSESRAEETSCLSGNGTIEGKFECGYLVSVKLGSEVLRGVLYHPEKMVAPPSIPQHENAIVPFKSKGHRSGRRRRNKRRWDPNYPKPNRSGYNFFFAEKHYSLKALYPNREREFTKMIGQSWNSLSPEERLVYQNIGLRDKERYKRELTEYKERMKLRETPEVGLP 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium918g00015 322 CDD HMG-box_AtHMGB9-like 241 307 - -
Vium918g00015 322 ProSiteProfiles ARID domain profile. 27 118 IPR001606 GO:0003677
Vium918g00015 322 MobiDBLite consensus disorder prediction 222 236 - -
Vium918g00015 322 Pfam HMG (high mobility group) box 241 308 IPR009071 -
Vium918g00015 322 Gene3D High mobility group box domain 225 318 IPR036910 -
Vium918g00015 322 SUPERFAMILY HMG-box 238 311 IPR036910 -
Vium918g00015 322 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 9 313 - -
Vium918g00015 322 FunFam High mobility group B protein 15 21 134 - -
Vium918g00015 322 Gene3D - 22 125 IPR036431 GO:0003677
Vium918g00015 322 SMART bright_3 28 119 IPR001606 GO:0003677
Vium918g00015 322 CDD ARID_HMGB9-like 29 114 IPR045303 GO:0003677
Vium918g00015 322 SUPERFAMILY ARID-like 25 126 IPR036431 GO:0003677
Vium918g00015 322 MobiDBLite consensus disorder prediction 218 241 - -
Vium918g00015 322 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 241 308 IPR009071 -
Vium918g00015 322 SMART ARID_2 24 114 - -
Vium918g00015 322 Pfam ARID/BRIGHT DNA binding domain 31 114 IPR001606 GO:0003677
Vium918g00015 322 SMART hmgende2 240 309 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium918g00015 Vium-Chr918 83733 86131 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium918g00015 14 315 ARID Transcription Factor Family AT1G76110 64.286 3.70e-134 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vium918g00015 ARID 9.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium918g00015 - - gmx:100784746 583.178