Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium918g00013 ATGAGCTTCCATCCTCCACCTGCCTTCGGTTCGTCATCTAATGTGGAACATAACACCCAGTTCTTACCAGTCCGAGACAGGGATAACTATTTGAATTTTTATACACATTATGCTCGGCCAATGCATGAAATCACAATTTCAACAAATGACAAGCCAAAACTTCTGAGTCAGCTGACTTCCTTACTTTCTGAGACTGGGTTGGACATTCTAGAAGCACATGCTTTTTCGACAACAGACGGCTATTCGTTGGATGTTTTTGTTGTTGGTGGTTGGCCAATAGAGGAGACGAAGAAATTAAAACATGAACTAGCAAAGAAAATTCAGAAACTCCAGGTAGATCCTCTATATGTCACTGATGGTTGCATATTTACTTTATATAGACAGAAGGTCGGAGTTTACAACGAGGTTTTGTGTAGGCTTAAGGAATTGAATGTCCCAGAAGCTGTGGTTCCTGGTTTTGAGGACGATCTTTGGGCGCACTTCTATCGCCTTCCCGCAAGGCACACCAAATCTTCGTTTCTCTGTCGTGTTAGGTATGCGTTGGACATGAATGTGGAGAGGGCAGAAGAAGTTCTTATGCACAAGAGGTTACTGGACATCGCCGGAGGCCCAACTACAGCAATCGGACCTGCAATTGAAGTCCGTCTTGTACAGGTTCGTTCTGCTTCTGCTTCTGCCGGTGGTTCTAGTAAATCCCTTCTTTTAAATTCACAAAGTAAAGTTTGTTCTGAAGATTCTGGTATTCCAGGCAGCATGAGCTTCCATCCTCCACCTGCCTTCGGTTCGTCATCTAATGTGGAACATAACACCCAGTTCTTACCAGTCCGAGACAGGGATAACTATTTGAATTTTTATACACATTATGCTCGGCCAATGCATGAAATCACAATTTCAACAAATGACAAGCCAAAACTTCTGAGTCAGCTGACTTCCTTACTTTCTGAGACTGGGTTGGACATTCTAGAAGCACATGCTTTTTCGACAACAGACGGCTATTCGTTGGATGTTTTTGTTGTTGGTGGTTGGCCAATAGAGGAGACGAAGAAATTAAAACATGAACTAGCAAAGAAAATTCAGAAACTCCAGCAACATCAATTGAAAGAAAATGGGAGTCTTCCTACTAGTACTACTGCAAAGCAAGAGCAAACCGGGATGAACTTTATCTGGAGAATTGATGCCGGGCGTCTGAGATATGAAAAGAAAATTGCATCTGGACCTTTGACTGATTTGTATAAAGGTACATTCTGCAATCAAGATGTAGCTATCAAGGTTTTAAAGCACGAGAATTTGAATGAAAATATACAAAGGGAGTTTGCTCAGGAAGTGTATATCCTAAGTAAAATTCAGCACAAAAATGTAGTTAAATTTGTTGGCGCTTGTACAAAACCCCCAAACCTGTACCTGGTCACAGAATACATGCCTGGTGGAAGTATGTTCGACTTTTTGCATAAACAGAAGACCGCCCTTGCTCTTCCATGTTTACTCAAAGTGGCCATTGATGTTTCCGAAGGAATGAAATATTTGCATCAGAATAATATCATACATCGTGACCTTAAAGCGGCTAATCTTTTGATAGATGAGAATGGGGTAGTTAAGGTTGCTGATTTTGGTGTGGCTAGAGTGCACAATCAGTCTGGCATAATGACTGCAGAAACAGGAACTTATCGGTGGATGGCTCCAGAGGTTATTGAACATAGACCATATGATCACAAAGCCGATGTCTTTAGCTTTGCCATTGTGCTTTGGGAACTGCTCACAGGAAAGCTTCCTTATGAGCATTTGTCCCCATTGCAAGCAGCAGTAGGAGTGATCCAGAAGGGTTTAAGGCCTAAAATTCCAAGCCATAGTCATTCAAAGTTGGTGGAATTGCTTCACTGGTGTTGGCACCACGATTCATCTTTGAGACCCAATTTCTCAGAAATTCTGGAATTTCTGCTACGTGTGACCAAGACGGTATGTGTAGGAGGATTCTTGACAAATTTTGTCTTATATTCAAAAGAAAAATCGAAGCCTCTACACCACTACTTTTTCTTGAACAGGTTACTGGGGAATGTGAAGGCTAGGGAATGCATGAAAATTATATTCACCAAACTCACTGTATGTACACATAGACATGTGTGA 2121 0.4158 MSFHPPPAFGSSSNVEHNTQFLPVRDRDNYLNFYTHYARPMHEITISTNDKPKLLSQLTSLLSETGLDILEAHAFSTTDGYSLDVFVVGGWPIEETKKLKHELAKKIQKLQVDPLYVTDGCIFTLYRQKVGVYNEVLCRLKELNVPEAVVPGFEDDLWAHFYRLPARHTKSSFLCRVRYALDMNVERAEEVLMHKRLLDIAGGPTTAIGPAIEVRLVQVRSASASAGGSSKSLLLNSQSKVCSEDSGIPGSMSFHPPPAFGSSSNVEHNTQFLPVRDRDNYLNFYTHYARPMHEITISTNDKPKLLSQLTSLLSETGLDILEAHAFSTTDGYSLDVFVVGGWPIEETKKLKHELAKKIQKLQQHQLKENGSLPTSTTAKQEQTGMNFIWRIDAGRLRYEKKIASGPLTDLYKGTFCNQDVAIKVLKHENLNENIQREFAQEVYILSKIQHKNVVKFVGACTKPPNLYLVTEYMPGGSMFDFLHKQKTALALPCLLKVAIDVSEGMKYLHQNNIIHRDLKAANLLIDENGVVKVADFGVARVHNQSGIMTAETGTYRWMAPEVIEHRPYDHKADVFSFAIVLWELLTGKLPYEHLSPLQAAVGVIQKGLRPKIPSHSHSKLVELLHWCWHHDSSLRPNFSEILEFLLRVTKTVCVGGFLTNFVLYSKEKSKPLHHYFFLNRLLGNVKARECMKIIFTKLTVCTHRHV 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium918g00013 706 Coils Coil 93 113 - -
Vium918g00013 706 ProSitePatterns Serine/Threonine protein kinases active-site signature. 513 525 IPR008271 GO:0004672|GO:0006468
Vium918g00013 706 Pfam Protein tyrosine and serine/threonine kinase 397 645 IPR001245 GO:0004672|GO:0006468
Vium918g00013 706 SUPERFAMILY ACT-like 41 113 IPR045865 -
Vium918g00013 706 PRINTS Tyrosine kinase catalytic domain signature 470 483 IPR001245 GO:0004672|GO:0006468
Vium918g00013 706 PRINTS Tyrosine kinase catalytic domain signature 616 638 IPR001245 GO:0004672|GO:0006468
Vium918g00013 706 PRINTS Tyrosine kinase catalytic domain signature 572 594 IPR001245 GO:0004672|GO:0006468
Vium918g00013 706 PRINTS Tyrosine kinase catalytic domain signature 507 525 IPR001245 GO:0004672|GO:0006468
Vium918g00013 706 PRINTS Tyrosine kinase catalytic domain signature 553 563 IPR001245 GO:0004672|GO:0006468
Vium918g00013 706 Gene3D Transferase(Phosphotransferase) domain 1 473 654 - -
Vium918g00013 706 ProSiteProfiles ACT domain profile. 43 117 IPR002912 -
Vium918g00013 706 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 241 645 - -
Vium918g00013 706 ProSiteProfiles ACT domain profile. 294 373 IPR002912 -
Vium918g00013 706 FunFam Kinase suppressor of Ras 1 385 473 - -
Vium918g00013 706 Coils Coil 344 367 - -
Vium918g00013 706 CDD STKc_MAP3K-like 402 645 - -
Vium918g00013 706 Gene3D Phosphorylase Kinase; domain 1 386 472 - -
Vium918g00013 706 ProSiteProfiles Protein kinase domain profile. 396 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium918g00013 706 SUPERFAMILY Protein kinase-like (PK-like) 375 645 IPR011009 -
Vium918g00013 706 SUPERFAMILY ACT-like 292 362 IPR045865 -
Vium918g00013 706 SMART serkin_6 396 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium918g00013 Vium-Chr918 71209 78734 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium918g00013 126 652 MAP Kinase Kinase Kinase AT4G35780 55.535 0.0 578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vium918g00013 PK_Tyr_Ser-Thr 6.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium918g00013 - - vum:124824038 1389.4