Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium918g00011 ATGCATGAAATCACAATTTCAACAAATGACAAGCCAAAACTTCTGAGTCAGCTGACTTCCTTACTTTCTGAGACTGGGTTGGACATTCTAGAAGCACATGCTTTTTCGACAACAGACGGCTATTCGTTGGATGTTTTTGTTGTTGGTGGTTGGCCAATAGAGGAGACGAAGAAATTAAAACATGAACTAGCAAAGAAAATTCAGAAACTCCAGCAACATCAATTGAAAGAAAATGGGAGTCTTCCTACTAGTACTACTGCAAAGCAAGAGCAAACCGGGATGAACTTTATCTGGAGAATTGATGCCGGGCGTCTGAGATATGAAAAGAAAATTGCATCTGGACCTTTGACTGATTTGTATAAAGGTACATTCTGCAATCAAGATGTAGCTATCAAGGTTTTAAAGCACGAGAATTTGAATGAAAATATACAAAGGGAGTTTGCTCAGGAAGTGTATATCCTAAGTAAAATTCAGCACAAAAATGTAGTTAAATTTGTTGGCGCTTGTACAAAACCCCCAAACCTGTACCTGGTCACAGAATACATGCCTGGTGGAAGTATGTTCGACTTTTTGCATAAACAGAAGACCGCCCTTGCTCTTCCATGTTTACTCAAAGTGGCCATTGATGTTTCCGAAGGAATGAAATATTTGCATCAGAATAATATCATACATCGTGACCTTAAAGCGGCTAATCTTTTGATAGATGAGAATGGGGTAGTTAAGGTTGCTGATTTTGGTGTGGCTAGAGTGCACAATCAGTCTGGCATAATGACTGCAGAAACAGGAACTTATCGGTGGATGGCTCCAGAGGTTATTGAACATAGACCATATGATCACAAAGCCGATGTCTTTAGCTTTGCCATTGTGCTTTGGGAACTGCTCACAGGAAAGCTTCCTTATGAGCATTTGTCCCCATTGCAAGCAGCAGTAGGAGTGATCCAGAAGGGTTTAAGGCCTAAAATTCCAAGCCATAGTCATTCAAAGTTGGTGGAATTGCTTCACTGGTGTTGGCACCACGATTCATCTTTGAGACCCAATTTCTCAGAAATTCTGGAATTTCTGCTACGTGTGACCAAGACGGTATGTGTAGGAGGATTCTTGACAAATTTTGTCTTATATTCAAAAGAAAAATCGAAGCCTCTACACCACTACTTTTTCTTGAACAGGTTACTGGGGAATGTGAAGGCTAGGGAATGCATGAAAATTATATTCACCAAACTCACTGTATGTACACATAGACATGTGTGA 1248 0.4014 MHEITISTNDKPKLLSQLTSLLSETGLDILEAHAFSTTDGYSLDVFVVGGWPIEETKKLKHELAKKIQKLQQHQLKENGSLPTSTTAKQEQTGMNFIWRIDAGRLRYEKKIASGPLTDLYKGTFCNQDVAIKVLKHENLNENIQREFAQEVYILSKIQHKNVVKFVGACTKPPNLYLVTEYMPGGSMFDFLHKQKTALALPCLLKVAIDVSEGMKYLHQNNIIHRDLKAANLLIDENGVVKVADFGVARVHNQSGIMTAETGTYRWMAPEVIEHRPYDHKADVFSFAIVLWELLTGKLPYEHLSPLQAAVGVIQKGLRPKIPSHSHSKLVELLHWCWHHDSSLRPNFSEILEFLLRVTKTVCVGGFLTNFVLYSKEKSKPLHHYFFLNRLLGNVKARECMKIIFTKLTVCTHRHV 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium918g00011 415 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 68 354 - -
Vium918g00011 415 Pfam Protein tyrosine and serine/threonine kinase 106 354 IPR001245 GO:0004672|GO:0006468
Vium918g00011 415 Gene3D Phosphorylase Kinase; domain 1 95 181 - -
Vium918g00011 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Vium918g00011 415 FunFam Serine/threonine-protein kinase isoform 1 95 183 - -
Vium918g00011 415 Coils Coil 53 76 - -
Vium918g00011 415 CDD STKc_MAP3K-like 111 354 - -
Vium918g00011 415 ProSiteProfiles ACT domain profile. 3 82 IPR002912 -
Vium918g00011 415 Gene3D Transferase(Phosphotransferase) domain 1 182 364 - -
Vium918g00011 415 PRINTS Tyrosine kinase catalytic domain signature 325 347 IPR001245 GO:0004672|GO:0006468
Vium918g00011 415 PRINTS Tyrosine kinase catalytic domain signature 179 192 IPR001245 GO:0004672|GO:0006468
Vium918g00011 415 PRINTS Tyrosine kinase catalytic domain signature 262 272 IPR001245 GO:0004672|GO:0006468
Vium918g00011 415 PRINTS Tyrosine kinase catalytic domain signature 216 234 IPR001245 GO:0004672|GO:0006468
Vium918g00011 415 PRINTS Tyrosine kinase catalytic domain signature 281 303 IPR001245 GO:0004672|GO:0006468
Vium918g00011 415 SMART serkin_6 105 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium918g00011 415 ProSiteProfiles Protein kinase domain profile. 105 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium918g00011 415 SUPERFAMILY Protein kinase-like (PK-like) 84 354 IPR011009 -
Vium918g00011 415 SUPERFAMILY ACT-like 2 71 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium918g00011 Vium-Chr918 64613 68624 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium918g00011 1 361 MAP Kinase Kinase Kinase AT4G35780 61.497 5.38e-166 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vium918g00011 PK_Tyr_Ser-Thr 1.7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium918g00011 - - vum:124824045 829.32