Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium918g00010 ATGACCCAAAGAGAGGAAGTTGTGCTTGATTTTGAAGACAACAATGGCCGCAGCAACAGCAAAGACGAAAATTCAGCATCGAAAGGTGTTGTCAACGGTCAAAGTGACAAGCTTCGTCAAGACTTGCAGGAAAAGCGCAGAGGCAGTGAATCAACAAGAAAGAAAAAGCAGGATCAGCAAAAAACCGAAGAAAGCCACCTCCAAACTTCACATTCACAAGAAAGCGTGGTGAGGTCTTCTTCGAACAATTCAACTCCACGATGCTCGTGGAAATCATCAATAAGCAGAACAAAGTCTCGGCTGATAGACCCTCCTGAGGAATCATGCGCAAATTCAGAATCAAGTGAACAAAAAGCGGCAGAAAATGATGACAGTGTTGAGGACATGCCTGAAATTTACAAGAAAACGAGGTTCAGTGCGTTCTCGCTGCTTCAGTGGCTATGTCTGGCCTTAATAATCGTAGCCTTGCTTTCAAACATTTGGATATCGTGCTTGCAAAAACTCAAACTCTGTGGCTTTCCCCTGTGGGAATGGGAGACAATGATTTTGGTTATTCTTTGTGGGCGTTTGCTCTCAGGTTGGATAATCAAGCTAATCGTCTTCTTCGTGGAACGCAATTTCATACTGCGAAAACGAGTGCTGTATTTTGTGTACGGTTTGAAACACTCGGTGAAAAACTGTGTCTGGTTGGGTCTTGTTCTGCTGGTGTGGCATTTTCTTTTGGTCAACGCGGTGAAGAAAAAGGTCAACTACAGGATTTTGTCGTGTGTGACAAAGGTTGTGGTGTGTCTGTTCATCGTCACTCTTTTGTGGCTCCTTAAAACGATCCTCGTGAAGGTCTTTGCCTTGCACTTCCACGTGAAAACGTTCTTCGAACGGATTCGGGAGGCTCTGTTCAGCCAATACGTGATCGAAACGCTGTCGTGTGATCGATTGAGGGAAGAGGAAGAAGAAGAAGGTGAAGATAGATCCGTTGGGAGGGTGTTGTGTAATAAGAAGAAGAAGCAAGATGATAAAATGTCGATCGAGCAGTTGCGTAGGTTGAATAAGAGAAATATATCAGCGTGGAATATGAAAAGAATGATCAACATCGTCATGCATGGGTCGTTTACTACATTGGACGAACGTATTTTGTGTTCAGATGTTGAGGATGAGCCTTTGCTGCAACTTCGAACCGAAAACCAAGCAAAGATCGCAGCTCAGAAAATTTTTCATAACGTTGCGCAACCAGGATCCCAATGCATTTTCTTGCAAGATGTGATGCAGTTCATGCGAAGAGACGAGGCTTTGAAGTCAATGGATCTGTTGGGAGCAGCGTGTGCAGAACATGGAATTAGCATGTCTTCTCTTAGAGAGTGGATGGTGAATGCTTTCAGGGAGAGAAGGGCACTGGCACTATCACTGAAAGACACGAAAACTGCTGTGGATGATCTCCATAACATGTTGAACATGATTGTCGGCATTGTCATTTTGATTGTCTGGCTTGCCATACTAGGAACTCCAATCCTACACTTCCTTGTCTTCATGGGATCCCAGCTTCTGTTGGCAGTGTTTGTGTTCGGGAATTCTTGCAGAACTGTTTTTGAAGCAATCATCTTCTTATTTGTGATGCACCCATTTGATGTTGGCGATCGATGTGAAGTAGATGGAATCCAGATGGTAGTGGAAGAGATGAATATACTGACAACAGTGTTCCTGAAGTGCGATAACCAGAAGGTTACATACCCAAACAGTGTTCTGGCTACCAAACCGATCAGTAATTATCAACGTAGTCCAGACATGGGAGATGCAGTGGATTTCTGCATTCATGTGTCCACCCCATTAGATAAAGTTGCAACTATGAAAACAAGAATTATAGAGTATATTGAAAGGAAGAATGAACACTGGCATGCGGCACCAATGGTGATAATGAAGGATGTGGAAGAGTTGAACAAAGTGAACATGTCAGTGTGGCTTACACACAAAATGAATTATCAGGACATTAAAGAAAGATGGAACAGGAGAGCGGAGTTGATTGAAGAGATGATCAAAGTGTTGAAGGAGCTTGATATTGAATACAGGCTTCTCCCCTTTGATGTCAATCTTACAAATCAACCTTCTCTGCTCTCCAATTGGAAAACTTGTGTCACCTCTCTCTCTTAG 2142 0.4323 MTQREEVVLDFEDNNGRSNSKDENSASKGVVNGQSDKLRQDLQEKRRGSESTRKKKQDQQKTEESHLQTSHSQESVVRSSSNNSTPRCSWKSSISRTKSRLIDPPEESCANSESSEQKAAENDDSVEDMPEIYKKTRFSAFSLLQWLCLALIIVALLSNIWISCLQKLKLCGFPLWEWETMILVILCGRLLSGWIIKLIVFFVERNFILRKRVLYFVYGLKHSVKNCVWLGLVLLVWHFLLVNAVKKKVNYRILSCVTKVVVCLFIVTLLWLLKTILVKVFALHFHVKTFFERIREALFSQYVIETLSCDRLREEEEEEGEDRSVGRVLCNKKKKQDDKMSIEQLRRLNKRNISAWNMKRMINIVMHGSFTTLDERILCSDVEDEPLLQLRTENQAKIAAQKIFHNVAQPGSQCIFLQDVMQFMRRDEALKSMDLLGAACAEHGISMSSLREWMVNAFRERRALALSLKDTKTAVDDLHNMLNMIVGIVILIVWLAILGTPILHFLVFMGSQLLLAVFVFGNSCRTVFEAIIFLFVMHPFDVGDRCEVDGIQMVVEEMNILTTVFLKCDNQKVTYPNSVLATKPISNYQRSPDMGDAVDFCIHVSTPLDKVATMKTRIIEYIERKNEHWHAAPMVIMKDVEELNKVNMSVWLTHKMNYQDIKERWNRRAELIEEMIKVLKELDIEYRLLPFDVNLTNQPSLLSNWKTCVTSLS 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium918g00010 713 MobiDBLite consensus disorder prediction 1 19 - -
Vium918g00010 713 MobiDBLite consensus disorder prediction 20 37 - -
Vium918g00010 713 Pfam Mechanosensitive ion channel 480 685 IPR006685 GO:0016020|GO:0055085
Vium918g00010 713 Coils Coil 662 682 - -
Vium918g00010 713 Gene3D - 539 588 IPR023408 -
Vium918g00010 713 Coils Coil 39 59 - -
Vium918g00010 713 PIRSF Memb_At2g17000 2 709 IPR016688 -
Vium918g00010 713 MobiDBLite consensus disorder prediction 69 99 - -
Vium918g00010 713 SUPERFAMILY Sm-like ribonucleoproteins 529 588 IPR010920 -
Vium918g00010 713 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 23 703 IPR016688 -
Vium918g00010 713 MobiDBLite consensus disorder prediction 38 68 - -
Vium918g00010 713 MobiDBLite consensus disorder prediction 1 126 - -
Vium918g00010 713 FunFam Predicted mechanosensitive ion channel 539 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium918g00010 Vium-Chr918 60338 62958 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium918g00010 49 700 Mechanosensitive Ion Channel Family AT1G78610 48.527 0.0 641
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium918g00010 K22048 - cave:132190409 811.986