Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9189g00001 ATGGCTCCTGCACCCTCCCACTTCCTCCTGCTCGCTCTCCTTCTACTCCTCACATACGCAGCACACACCAGAGAAACTCCACCTCCCACTCCCCAACGAATCATTGCACCACCGCCGCCCGACACCGACAATGACACCTCGCCGCCTTTCAGACCAGGCATTGCGGTGGTCGTATGCGTTTTGACCACCATAATCTCCCTCACATCACTCCTCCTTCTTTACATCAAACACTGCAACGGCGGCGCCATCCATAGCGGCGGGAGCTCGATTCCGTGGACGGTGGCGCCGTTCTCCGGGAGAAAGAACTCCGGCATTGACCGGACCGTAGTGGAATCGCTTCCCGTTTTCAGATTCGGAGCGCTGCGGGGACAAAAGGAAGGGCTGGACTGCGCGGTGTGCCTGACGAAGTTCGAGGCGGCGGAGGTTCTCCGGCTGTTGCCGAAATGCAAGCACGCGTTCCACGTCGAGTGCGTGGACACGTGGCTGGACGCGCATTCCACGTGACCTCTGTGCCGGTACCGCGTGGATCCGGAGGACATTCTTCTGGTGGAGGACACAAAGCCTTTCCGCTGCCAAACTCAGCCCCAGCGCAACAGCCAGAACAACAACACGAACCAGGAACGCGCACGGTTGAATATGGACGTGGAGAAGCAGGAGATTGGACGGAGGCATTCGTCGGTGGGGGAGAGGGGAACGGAGGAGCAGAGTCGGAGGTGGACGACGTCGTTCAGGAGGTCGTTGGATAGCGCCACATCGAGGAAAAAGAACGAGAGCGTTGGTGTTGTTGGGTTTGGTTGGTTTGTACGTGGCAGAAAAGACGGGATGTTGTTGACGCAAGAAGCGGAGAGAGAGGGAGACAGGACAAGCGCGGAACGGAGGTTGGAACACCGGATCATTGTCTCCCCGGGCCCGGAGCCAGGCCCAGGGAAAATGAAAATGAAAAAGAATATGAATATGAATGGGGTCCAGCAGAGATGGAGCGACGTGCAAGCTTCGGACCTGCTGTATCTGACGTCGGAGATGATAATGAGCGAGGCGCAATGGAACACGCGCCGAGGTGGAAGACGAAGGGGGACGCGCCGTACCAATGATGATGAGGTTGAGGACAGTTGGAGTGGCAGAGGGATAATAAATTCGAGAAGTGTGTCTGAGATCACGGGATTGAGCAGGTTCTCCAGCAATGGCAATAATAATAACGAGGAGGACACAGAGAGACAGAGAGACAGAGAGTGGGAGCAACAAGGACAAGGACATGGAGAGAGAGAAAGAGAAGAGGGTCTGGTGAGAAGATGGTTGGGTTGGATTTCCAAGTCACACACACATTCCCAAACCCAACCATCGGTACGGTAG 1350 0.563 MAPAPSHFLLLALLLLLTYAAHTRETPPPTPQRIIAPPPPDTDNDTSPPFRPGIAVVVCVLTTIISLTSLLLLYIKHCNGGAIHSGGSSIPWTVAPFSGRKNSGIDRTVVESLPVFRFGALRGQKEGLDCAVCLTKFEAAEVLRLLPKCKHAFHVECVDTWLDAHSTXPLCRYRVDPEDILLVEDTKPFRCQTQPQRNSQNNNTNQERARLNMDVEKQEIGRRHSSVGERGTEEQSRRWTTSFRRSLDSATSRKKNESVGVVGFGWFVRGRKDGMLLTQEAEREGDRTSAERRLEHRIIVSPGPEPGPGKMKMKKNMNMNGVQQRWSDVQASDLLYLTSEMIMSEAQWNTRRGGRRRGTRRTNDDEVEDSWSGRGIINSRSVSEITGLSRFSSNGNNNNEEDTERQRDREWEQQGQGHGEREREEGLVRRWLGWISKSHTHSQTQPSVR 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9189g00001 449 Pfam Ring finger domain 129 172 IPR001841 -
Vium9189g00001 449 SUPERFAMILY RING/U-box 116 177 - -
Vium9189g00001 449 MobiDBLite consensus disorder prediction 400 424 - -
Vium9189g00001 449 CDD RING-H2_EL5-like 129 172 - -
Vium9189g00001 449 FunFam RING-H2 finger protein ATL43 105 179 - -
Vium9189g00001 449 MobiDBLite consensus disorder prediction 30 46 - -
Vium9189g00001 449 SMART ring_2 130 171 IPR001841 -
Vium9189g00001 449 MobiDBLite consensus disorder prediction 191 238 - -
Vium9189g00001 449 MobiDBLite consensus disorder prediction 27 48 - -
Vium9189g00001 449 MobiDBLite consensus disorder prediction 387 424 - -
Vium9189g00001 449 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Vium9189g00001 449 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 433 - -
Vium9189g00001 449 MobiDBLite consensus disorder prediction 191 209 - -
Vium9189g00001 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 179 IPR013083 -
Vium9189g00001 449 MobiDBLite consensus disorder prediction 210 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9189g00001 Vium-Chr9189 8786 11126 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9189g00001 52 442 C3H Transcription Factor Family AT5G05810 44.258 9.39e-81 253