Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9185g00003 ATGGCTTCTGCTTCTGACCATTTTCCTATCATCTTCATCATCACCCTTTTCGTGCTCCTGTCATCACACATTTTTACTGTGGCGGATTCTCTGTTCAATGCAGTCGGAACCTTCCAACTTCATGGCCTACCAGATATTCATTTCATTGAAGAGAACGATGAAAAGCAGATTGAGAAAATCTCAGGACTGGATGAGAATGAAAAGAAGCAAGCTTTCATAGTGGACAAGTTTAGATCCTTGCTTGGACTAAAGACTTTCCACACCAAAGTACCATCCAATGGTGATTTCGAGTTTCTCTCTCCCTCACCTTCTCCATCTCCCCTCATTGAAGAAGCTCAGGCTTCGGCCCCTTCTCCTTCTCCACTTCCACACGTGCACTCTCATTCCCATCATCCACGGCACCGCAAGAATCCTCCCCTTCACCAAATTTATCATGAAGACAGAGGCAGGACCAAAAGAATACTAATAGCTGTTCTTGTATCTGCTGGTGTTGCTACATTGATTGGTGCTTGTGGATTATTCTTGTTGTGGAGGAAATTCTCGAGTCACAAAAAGAAACCCAAAAGGACAATGCCACTCTGTAGCAAGAGCAAGGGAAGTGGAGGTTCTTATCGAAGTTCATCAGGCAAGGTGAGTTTAAACTCTGGACTAGATCTGTTTTATCTTAATGCTTTAGGCGAGGACGTTGAGCAACATGGTTGCACCTTGAAAAAAACTTGCAAGGATGGTATACAGTATGATAATGTTAGCGGTTCTTCCACCAAGGAAATTGCATCTGTTCACGAAGATGCAGACTCAGAAAAGGGTGAAGCTGAATCTGATGGCGGCAACTCTTCTGGGGATAAGATCATCCCTGAAGATTGTCATTCTTCAGACGATGAAAGTTTCCATTCCTTCGTTGATTCTCATTCCAATAATAGACTTTCCAATGCTTCAGCTTGTAATCTTAGTGACACAAACTCTCTGTCACGTCAAAATTCAAGTTCATTACTGAACCAATTTCTTCGCTCTCCACCACACAACTCAATCCCAAATACACAATCTCACCAACCATCAAGTAGTACAAAACACGAGGAGCAAGAGACTGAGACCACTCACCAATGTTCAAAAACATTTACTCCACCACCACCACCACCACCTCCTCCTCCTCCTCCTCCTCCTCCAACTCCTCCTCCACCATTGCAAATGCCGTTGTTTTCTTTGCATTCTCTCACTTCTTCCTCTAGAGTCTCTTCTCATTCCCTACTTTCTTTGACATCTAATAATTTATCATCTCCGGTAAATTCAGACACTTTCTCAGGTTCAAATCAAAGTCCAGAAAAGGAGTTGCCTTCCACACCTGAACCTTACCCTACACATTCTCCTCCCAACATCCCCCCACCACCATGCCCACCTCCATTTCTCAAAGGCAATAGTAACAGTACCAAAACCCCACCTCCTCCACCATCTCAACTCCCCCAATTCACCCCACTTGGTAAAGATGGCGCACCATTGCCAAAACTAAAACCACTTCACTGGGACAAAGTAAGAGCCGCACCAAATCGCACAATGGTTTGGGATAAACTGCGATCGAGCTCATTCGAGTTGGATGAGGAAATGATCGAGTCTCTTTTTGGTTACAACTTGCAAAATTCAATTAAGAACGACGAAACAAAGAGTAAAACCCCGTCACCAGGCAAGCACGTACTTGAGCCAAAACGCCTGCAGAACATAACTATACTGTCAAAAGCTCTGAATGCGACAGCAGAGCATGTCTGCGAGGCCTTAATGCAAGGGAAGGGGCTGTCTTTACCCCAACTAGAGGCACTAGTGAAGATGGTACCCACCAAGGAAGAAGAATCCAAGCTCTTCAATTATAAAGGTGACATCAATGAATTGGGGTCCGCCGAAAGGTTCGTGAGAGCAATGCTTGATGTGCCATATGCCTTTCAAAGAGTAGAAGGCATGCTTTTCAGAGAGACGTTTGACGATGAAGTAGTTCACCTCAGGAACTCATTTTCAATGCTTGAGGAAGCATGCAAGGAACTTCGATCAAGCAGGTTATTCTTGAAGCTACTAGAAGCAGTGCTCAAAACAGGAAACCGTATGAACGTTGGAACAATCAGAGGAGGTGCTAGAGCATTTAAACTAGATGCCCTTCTCAAGCTTGCAGATGTTAAGGGAACTGATGGGAAAACCACGTTGCTCCATTTCGTTGTTCAGGAGATTGTTCGTTCGGAAGGAATAAGAGTTTCAGATAGCATTATGGGAAAAATCAGCCAGAGAAGTAAGAACAGAACGGAGGAAGAGAAGGAAGAAGATTACAAAAGAATGGGATTAGAACTTGTTTCTGGTCTCAGCACTGAGTTATACAACGTGAAGAAAACAGCCACAATAGACTTGGATGTTCTTGCAAGCTCTGTGTCGAATCTATCAGAAGGTATGAAAAAGCTGCAACATATAGTGGAAAAGGAACTGCATAAAGATGAGAGAAGCATTAACTTTGTACAGTGTATGAAGTCATTTCTGAACTACGCTGATGCAAACTTGAAAGAGTTACGAGGAGATGAAAATAAAGTATTGGTACGTGTGAAAGAAATCACGGAATATTTTCATGGGGATGTGAGCAAAGAAGATGCAAATCCTTTGAGGATATTTGTGATTGTTAGAGATTTTCTGGGGATGTTAGATAATGTGTGTAAAGAACTTAGAAAGTCTAAAGCTCCACGTAGTCCAAATCCTCTTGCCATGCTCCCTTTAGATAGATCATAG 2751 0.4311 MASASDHFPIIFIITLFVLLSSHIFTVADSLFNAVGTFQLHGLPDIHFIEENDEKQIEKISGLDENEKKQAFIVDKFRSLLGLKTFHTKVPSNGDFEFLSPSPSPSPLIEEAQASAPSPSPLPHVHSHSHHPRHRKNPPLHQIYHEDRGRTKRILIAVLVSAGVATLIGACGLFLLWRKFSSHKKKPKRTMPLCSKSKGSGGSYRSSSGKVSLNSGLDLFYLNALGEDVEQHGCTLKKTCKDGIQYDNVSGSSTKEIASVHEDADSEKGEAESDGGNSSGDKIIPEDCHSSDDESFHSFVDSHSNNRLSNASACNLSDTNSLSRQNSSSLLNQFLRSPPHNSIPNTQSHQPSSSTKHEEQETETTHQCSKTFTPPPPPPPPPPPPPPPTPPPPLQMPLFSLHSLTSSSRVSSHSLLSLTSNNLSSPVNSDTFSGSNQSPEKELPSTPEPYPTHSPPNIPPPPCPPPFLKGNSNSTKTPPPPPSQLPQFTPLGKDGAPLPKLKPLHWDKVRAAPNRTMVWDKLRSSSFELDEEMIESLFGYNLQNSIKNDETKSKTPSPGKHVLEPKRLQNITILSKALNATAEHVCEALMQGKGLSLPQLEALVKMVPTKEEESKLFNYKGDINELGSAERFVRAMLDVPYAFQRVEGMLFRETFDDEVVHLRNSFSMLEEACKELRSSRLFLKLLEAVLKTGNRMNVGTIRGGARAFKLDALLKLADVKGTDGKTTLLHFVVQEIVRSEGIRVSDSIMGKISQRSKNRTEEEKEEDYKRMGLELVSGLSTELYNVKKTATIDLDVLASSVSNLSEGMKKLQHIVEKELHKDERSINFVQCMKSFLNYADANLKELRGDENKVLVRVKEITEYFHGDVSKEDANPLRIFVIVRDFLGMLDNVCKELRKSKAPRSPNPLAMLPLDRS 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9185g00003 916 MobiDBLite consensus disorder prediction 444 468 - -
Vium9185g00003 916 PANTHER FORMIN-RELATED 407 901 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vium9185g00003 916 MobiDBLite consensus disorder prediction 419 502 - -
Vium9185g00003 916 SUPERFAMILY Formin homology 2 domain (FH2 domain) 504 900 - -
Vium9185g00003 916 MobiDBLite consensus disorder prediction 371 397 - -
Vium9185g00003 916 SMART it6_source 491 904 IPR015425 -
Vium9185g00003 916 PRINTS Proline rich extensin signature 444 465 - -
Vium9185g00003 916 PRINTS Proline rich extensin signature 368 380 - -
Vium9185g00003 916 PRINTS Proline rich extensin signature 383 399 - -
Vium9185g00003 916 PRINTS Proline rich extensin signature 479 495 - -
Vium9185g00003 916 MobiDBLite consensus disorder prediction 258 275 - -
Vium9185g00003 916 MobiDBLite consensus disorder prediction 332 353 - -
Vium9185g00003 916 MobiDBLite consensus disorder prediction 332 399 - -
Vium9185g00003 916 MobiDBLite consensus disorder prediction 419 443 - -
Vium9185g00003 916 ProSiteProfiles Formin homology-2 (FH2) domain profile. 491 915 IPR015425 -
Vium9185g00003 916 MobiDBLite consensus disorder prediction 285 300 - -
Vium9185g00003 916 Pfam Formin Homology 2 Domain 495 889 IPR015425 -
Vium9185g00003 916 Gene3D Formin, FH2 domain 514 905 IPR042201 -
Vium9185g00003 916 MobiDBLite consensus disorder prediction 187 208 - -
Vium9185g00003 916 MobiDBLite consensus disorder prediction 107 140 - -
Vium9185g00003 916 MobiDBLite consensus disorder prediction 258 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9185g00003 Vium-Chr9185 33036 36976 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9185g00003 476 909 FH2 protein (formin) Gene Family AT3G05470 74.828 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9185g00003 - - gmx:100793761 1314.67