Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9185g00002 ATGGATGGGAACGACACATGTTGGGACAAAGTCATTGCAGAAATGATTGAAATGGGTTTCGAGTATTCGAGCATAGTCGAAGCCATTAAAGTAGTGGGTCCATCTGTTCCCAGCGCTGTGGAACACATTCTCAAGTCTACTACTGACGAAGCATCCACTACCCACACCTCCAATTCGCATGCCCGCAATGGGAATGCTCTCAAAAAGCGACCTTTGCGTAAGTGTTTAGTTCGACAATCCAATATAATATTCGCGAACCGTTTCCATTCCAATGACGATGTCAAAGAACACAGGAAGGAACTCCCTCAATTGGGAATTAAACCCAATCCCAGTGTGCTTTCAGAGCCTTTTGAAGCGCAAGATTTGGATGTTGAATCTGATTGGGAGCAGAAGACTAGTAATCTGATGAAAAAGCATTTTGGTTTTTCATCTTTGAAGTTTCAGAAGGAAGCCATCTCTGCCTGGGTTGCTCACAAAGACTGTCTTGTCCTCGCTGCAACAGGATCCGGGAAATCTCTGTGCTTTCAGATTCCTGCATTGTTGTCTGGGAAAGTGGTGGTTGTGATTTCGCCCTTGATAAGCCTCATGCATGACCAGTGTTTAAAGCTGACTGGACATGGGATCAGTGCGTGCTTTCTTGGCTCCGGGCAACCAGATAATACCGTTGAACAGAAAGCAATGAGAGGATTGTATAGTATAGTGTATATTTGCCCAGAGACTGTTCTAAGATTGATTCAACCACTGCAGAAGCTTGCAGAAAGTCGTGGTATTGCTTTATTTGCAATTGACGAGGTACACTGTGTTTCGAATGGGTGCAAAAGGAGAGGATTTCGTCAGATTACAAGGCGACTGTCTGTGCTGAGAGAAAATTTCAGTACAAGCAAGCTAAAATCCTTAAAATTTGATATACCTTTGATGGCCTTAACAGCTACAGCTACAAAAAGAGTACGAGAAGACATTTTAAAATCATTGCAAATGTCAAAAGAAACGAAAGTTTGCCTTACATCATTTTTTAGACCTAACTTACGATTCATGGTGAGTTTGTTCATTACTATAACTTGTATATTCTTCTCTGAATATATCATCTCTTGTTACAATAGAAAAGATTCACTGTTGTTTCTTACAGGTAAACATATCAAGTATCAAGGCTTCTTATGCAAAAGATTTTCATCATTGATTCATGTATATGGTAGAAAGAAAAATATTGATGAAAATGAAAAGGTTTTCATCTCAGATGATTCAGATCAGTTTTCTAATAGCTCCGATGCTAGTAGTATCTCTGATACAGACAGTGTTTCACCTGATGACATGGATGACAACCAAGATGATTATGCTTATAGTGATATTAATATAATGCACTCAGGAAACTCTGATGACTTTTTAACTGGGAAAGAACTGTCAATTGAATTCCTGGAGAATGATATCGATGCCTTTCAAAGTGTGGATAACTTAGATGTTGCCCGTGGTGACTTCCGTGTGCTACCTCACAAGGAATTGCAATTATCCAAGAACACCAACACACCTAAGAAACCAGAAAGAAGAGTAAAAATTCATAATGAGCCTTTGGAACAAGGACCAACAATCATATATGTACCCACCAGAAAAGAAACTCTGAGAATTGCGAAGTACCTATGCAAGTTTGGTGTGAAGGCAGCTGCTTATAATGCAGGGCTTCCCAAATTGCATCTAAGAAAGGTTCAAAAAGAGTTTCACGAAAATAGTTTAGAGGTTATTGTTGCTACAATAGCTTTTGGAATGGGTATTGACAAATCAAATGTCAGAAGAATCATCCACTATGGTTGGCCACAGAGTTTAGAAGCATACTACCAAGAAGCTGGACGAGCTGGTCGAGATGGGAAATTATCAGATTGCATTCTGTATGCAAACCTAGCAAGCAAGCCGTTTCTTTTGCCTAGTCGAAAAAGTGAAGATCAGAAAAAACAAGCATATATTATGTTGTCTGATTGTTTCAGATATGGAATGAATACTTCATGCTGTCGACCAAAGATTCTCGTTGAATACTTTGGAGAGGATTTCAGTCATCAGAAATGTCACTTATGTGATGTGTGCATTGATGGTCCACCTAAAAAGCAGAATCTAAAAGAGGAGGCCTGTATTTTTCTGCAAACTATAGGTGCCCAAAATCAGGGGCGTAGGGATTCCAAGGATTACTCATATGACGATGATATACATTTTGACTACAATTACAGAGGACAAGGAGAGAGGCCGAATCTTAGGATGTTGGTTGAAAAAATAAGGCAGCAGACTTGTTTTCACTTGAGAAATGTCCGTATACAGTTTCAAAAGTTTTCAACCACTGACATGTTATGGTGGAGAGGACTTGCTCGAATTTTGGAAGTTAAAGGATACATCAGAGAAGGAGATGACAAGACCCATGTTCAGGCAAAATTCCCGGAATTTGTGAGGTCCATGAATGAGGAAGCTTTCTGGGTTTACCCTGAAGCAGATATGTTGCTTGCAAGAAAATTAACTGAGAAACCATTTTCCTCATTCTCAGAATGGGGAAAGGGTTGGGCTGATCCTGAGATCCGTCGCCAGCGCCTAGAAAGAATGGGAGTGAAGAGAAAGTCAGGGATGGTGTCAAGCTCCAAAAGGAAACGAAAGAGAAAAGTGCAACATGATTTCAGAACTTCTCGTGGCAGACTAACAGCAAAACTCTCAAAATATAAGTCTGAGTTAAGATTTAACTTGGTTATTGTTGCTACAATAGCTTTTGGAATGGGTATTGACAAATCAAATGTCAGAAGAATCATCCACTATGGTTGGCCACAGAGTTTAGAAGCATACTACCAAGAAGCTGGACGAGCTGGTCGAGATGGGAAATTATCAGATTGCATTCTGTATGCAAACCTAGCAAGCAAGCCGTTTCTTTTGCCTAGTCGAAAAAGTGAAGATCAGAAAAAACAAGCATATATTATGTTGTCTGATTGTTTCAGATATGGAATGAATACTTCATGCTGTCGACCAAAGATTCTCGTTGAATACTTTGGAGAGGATTTCAGTCATCAGAAATGTCACTTATGTGATGTGTGCATTGATGGTCCACCTAAAAAGCAGAATCTAAAAGAGGAGGCCTGTATTTTTCTGCAAACTATAGGTGCCCAAAATCAGGGGCGTAGGGATTCCAAGGATTACTCATATGACGATGATATACATTTTGACTACAATTACAGAGGACAAGGAGAGAGGCCGAATCTTAGGATGTTGGTTGAAAAAATAAGGCAGCAGTTTCAAAAGTTTTCAACCACTGACATGTTATGGTGGAGAGGTCTTGCTCGAATTTTGGAAGTTAAAGGATACATCAGAGAAGGAGATGACGAGACCCATGTTCAGGCAAAATTCCCGGAATTTGTGAGGTCCATGAATGAGGAAGCTTTCTGGGTTTACCCTGAAGCAGATATGTTGCTTGCAAGAAAATTAACTGAGAAACCATTTTCCTCATTCTCAGAATGGGGAAAGGGTTGGGCTGATCCTGAGATCCGTCGCCAGCGCCTAGAAAGAATGGGAGTGAAGAGAAAGTCAGGGATGGTGTCAAGCTCCAAAAGGAAACGAAAGAGAAAAGTGCAACATGATTTCAGAACTTCTCGTGGCAGACTAACAGCAAAACTCTCAAAATATAAGTGA 3645 0.4022 MDGNDTCWDKVIAEMIEMGFEYSSIVEAIKVVGPSVPSAVEHILKSTTDEASTTHTSNSHARNGNALKKRPLRKCLVRQSNIIFANRFHSNDDVKEHRKELPQLGIKPNPSVLSEPFEAQDLDVESDWEQKTSNLMKKHFGFSSLKXFQKEAISAWVAHKDCLVLAATGSGKSLCFQIPALLSGKVVVVISPLISLMHDQCLKLTGHGISACFLGSGQPDNTVEQKAMRGLYSIVYICPETVLRLIQPLQKLAESRGIALFAIDEVHCVSNGCKRRGFRQITRRLSVLRENFSTSKLKSLKFDIPLMALTATATKRVREDILKSLQMSKETKVCLTSFFRPNLRFMVSLFITITCIFFSEYIISCYNRKDSLLFLTGKHIKYQGFLCKRFSSLIHVYGRKKNIDENEKVFISDDSDQFSNSSDASSISDTDSVSPDDMDDNQDDYAYSDINIMHSGNSDDFLTGKELSIEFLENDIDAFQSVDNLDVARGDFRVLPHKELQLSKNTNTPKKPERRVKIHNEPLEQGPTIIYVPTRKETLRIAKYLCKFGVKAAAYNAGLPKLHLRKVQKEFHENSLEVIVATIAFGMGIDKSNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLSDCILYANLASKPFLLPSRKSEDQKKQAYIMLSDCFRYGMNTSCCRPKILVEYFGEDFSHQKCHLCDVCIDGPPKKQNLKEEACIFLQTIGAQNQGRRDSKDYSYDDDIHFDYNYRGQGERPNLRMLVEKIRQQTCFHLRNVRIQFQKFSTTDMLWWRGLARILEVKGYIREGDDKTHVQAKFPEFVRSMNEEAFWVYPEADMLLARKLTEKPFSSFSEWGKGWADPEIRRQRLERMGVKRKSGMVSSSKRKRKRKVQHDFRTSRGRLTAKLSKYKSELRFNLVIVATIAFGMGIDKSNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLSDCILYANLASKPFLLPSRKSEDQKKQAYIMLSDCFRYGMNTSCCRPKILVEYFGEDFSHQKCHLCDVCIDGPPKKQNLKEEACIFLQTIGAQNQGRRDSKDYSYDDDIHFDYNYRGQGERPNLRMLVEKIRQQFQKFSTTDMLWWRGLARILEVKGYIREGDDETHVQAKFPEFVRSMNEEAFWVYPEADMLLARKLTEKPFSSFSEWGKGWADPEIRRQRLERMGVKRKSGMVSSSKRKRKRKVQHDFRTSRGRLTAKLSKYK 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9185g00002 1215 Gene3D - 960 1136 IPR036388 -
Vium9185g00002 1215 Gene3D - 632 819 IPR036388 -
Vium9185g00002 1215 MobiDBLite consensus disorder prediction 414 432 - -
Vium9185g00002 1215 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 46 IPR015940 -
Vium9185g00002 1215 MobiDBLite consensus disorder prediction 1184 1200 - -
Vium9185g00002 1215 SMART ultradead3 141 348 IPR014001 -
Vium9185g00002 1215 MobiDBLite consensus disorder prediction 414 444 - -
Vium9185g00002 1215 PANTHER DNA HELICASE RECQ FAMILY MEMBER 123 352 - -
Vium9185g00002 1215 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 784 1001 IPR001650 -
Vium9185g00002 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 632 IPR027417 -
Vium9185g00002 1215 Gene3D - 113 339 IPR027417 -
Vium9185g00002 1215 SMART helicmild6 539 620 IPR001650 -
Vium9185g00002 1215 SMART helicmild6 854 948 IPR001650 -
Vium9185g00002 1215 Pfam RecQ zinc-binding 969 1019 IPR032284 -
Vium9185g00002 1215 Pfam RecQ zinc-binding 641 691 IPR032284 -
Vium9185g00002 1215 Gene3D - 849 957 IPR027417 -
Vium9185g00002 1215 Gene3D - 497 629 IPR027417 -
Vium9185g00002 1215 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 153 331 IPR014001 -
Vium9185g00002 1215 CDD DEXHc_RecQ 136 338 - -
Vium9185g00002 1215 Pfam Helicase conserved C-terminal domain 518 619 IPR001650 -
Vium9185g00002 1215 Pfam Helicase conserved C-terminal domain 875 947 IPR001650 -
Vium9185g00002 1215 FunFam ATP-dependent DNA helicase 959 1133 - -
Vium9185g00002 1215 FunFam ATP-dependent DNA helicase 501 629 - -
Vium9185g00002 1215 Pfam DEAD/DEAH box helicase 148 317 IPR011545 GO:0003676|GO:0005524
Vium9185g00002 1215 MobiDBLite consensus disorder prediction 1174 1215 - -
Vium9185g00002 1215 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 515 673 IPR001650 -
Vium9185g00002 1215 FunFam ATP-dependent DNA helicase 114 339 - -
Vium9185g00002 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 906 1030 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9185g00002 Vium-Chr9185 15248 30172 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9185g00002 521 633 Eukaryotic Initiation Factors Gene Family AT5G11170 27.434 1.69e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9185g00002 K10900 - gmx:100793222 1188.71