Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9180g00001 ATGAAGTTGCAGTTTTCTATTGTTGCAATTATTCTATTAGGCTCCACACTGTCTTTCTGTGGCATGATTGTAGCTGACTTGAAGTCTGACAAACAAGCTCTGTTGGAGTTTTCTTCAAGTGTCCTACATGCCCCAAGACTCAACTGGAAGAATGACTCCGCTTCAATTTGCATCTCATGGGTTGGTGTGACATGCAACTCAAATGGCACACGTGTCATAGGCCTTCACCTTCCAGGAATGGGATTAACTGGGACCATTCAAGAGAGCAGCATAGGAAAACTAGATGCTCTTAGGGTCCTCAGTCTTCATTCCAATGGTCTCAGAGGAAATCTTCCTTCTAACATCCTCTCTATTCCTTCACTCCAATTTGTATACCTTCAGCACAATAACTTCTCTGGTGTTATTCCTTCTCCTGTGTCCCCTAAACTCTTTGCATTGGATATCTCCTGTAACTCCTTTTCTGGCAGCATCCCACCTGCAATTCAGAACCTGAGAAGACTCACTTGGTTGTATCTCCAAAACAATTCCATATCTGGGGCTATTCCTGACTTCAACCTTCCAAGTCTCAAACATTTGAACTTGAGTTATAATAACTTCAATGGCTCAATTCCAAATTCCATAAAGACATTCCCTTATTCTTCTTTTGTCGGGAACTCTCTCTTATGTGGGCCACCACTAAATGATTGCTCTACAATCTCCCCTTCTCCATCTGCTTCCACTGATGATTACCCGCCACTCACCCCACCTACCATCCAAAACCAAAAGGGTACCAACCATAAGAAAAGCTTTGGCCTGGCTCCTATACTTGCTCTAGTCATTGGGGTCTTTGCCTTCCTCTCTCTGCTAGTTGTAGTGATCTGTGTCTTCTGTTTGAAGAGGAAGAAGAACAGTAAAAGCAGTGGCATACTGAAAGGAAAGGCTTCGTGTACTGGAAAGACAGAGGTTTCCAAGAGTTTCGGAAGTGGGGTGCAAGGGGCTGAAAAAAACAAACTATTTTTCTTTGAAGGTTCCTCTTCAACCTTTGACCTTGAGGATTTGCTGAAGGCTTCAGCTGAAGTTCTTGGAAAAGGAAGCTATGGAACAGCATATAAGGCTGTTTTGGAGGAGGGAACAACAGTGGTAGTGAAAAGGTTGAAAGAAGTTGTGGTAGGAAAGAAGGAGTTTGAGCAGCATTTGGAGATTGTAGGGAAATTTGGAAGCCACCCAAATGTGATGCCCCTAAGGGCTTATTACTATTCCAAAGATGAAAAACTTCTGGTTTACAACTACATGCCAGGTGGCAGCTTGTTTTTCTTGTTGCACGGAAACAGAGGTGCAGGAAGAACCCCACTTGACTGGGATTCCAGAGTGAAGATTTTGCATGGAGCTGCCAAGGGAATTGCTTTCATCCACTCCGAGGGAGGTCCAAAATTCACACATGGCAACATCAAGTCAAACAATGTGCTGATAACCCAAGAACTAGAAGGATGCATCAGTGATGTTGGATTGCCACCTCTAATGAACACCCCAGCAACCATGTCTAGAGCCAATGGCTACAGAGCTCCAGAAGTCACAGACTCAAAGAAGATCACTCAGAAGTCTGATGTATACAGCTTTGGCGTGGTGCTGCTTGAAATGCTGACAGGGAAGACCCCACTGAGGTATCCAGGGTATGAGGATGTGGTTGATCTTCCAAGGTGGGTGAGGTCTGTGGTTAGGGAGGAATGGACTGCAGAAGTGTTTGATGAGGAGCTTCTGAGAGGGCAGTACGTTGAAGAGGAAATGGTGCAGATGCTTCAGATTGCATTGGCATGTGTAGCTAAGGGCTCAGAAAATAGGCCTAGAATGGATGAAGTTGCTAGAATGATTGAGGAAATAAAGCATCCGGAGTTGAAGAACCGGCCATCTTCTGAGTCTGAATCTAATGTGCAAACACCATGA 1920 0.4453 MKLQFSIVAIILLGSTLSFCGMIVADLKSDKQALLEFSSSVLHAPRLNWKNDSASICISWVGVTCNSNGTRVIGLHLPGMGLTGTIQESSIGKLDALRVLSLHSNGLRGNLPSNILSIPSLQFVYLQHNNFSGVIPSPVSPKLFALDISCNSFSGSIPPAIQNLRRLTWLYLQNNSISGAIPDFNLPSLKHLNLSYNNFNGSIPNSIKTFPYSSFVGNSLLCGPPLNDCSTISPSPSASTDDYPPLTPPTIQNQKGTNHKKSFGLAPILALVIGVFAFLSLLVVVICVFCLKRKKNSKSSGILKGKASCTGKTEVSKSFGSGVQGAEKNKLFFFEGSSSTFDLEDLLKASAEVLGKGSYGTAYKAVLEEGTTVVVKRLKEVVVGKKEFEQHLEIVGKFGSHPNVMPLRAYYYSKDEKLLVYNYMPGGSLFFLLHGNRGAGRTPLDWDSRVKILHGAAKGIAFIHSEGGPKFTHGNIKSNNVLITQELEGCISDVGLPPLMNTPATMSRANGYRAPEVTDSKKITQKSDVYSFGVVLLEMLTGKTPLRYPGYEDVVDLPRWVRSVVREEWTAEVFDEELLRGQYVEEEMVQMLQIALACVAKGSENRPRMDEVARMIEEIKHPELKNRPSSESESNVQTP 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9180g00001 639 SUPERFAMILY L domain-like 47 227 - -
Vium9180g00001 639 ProSiteProfiles Protein kinase domain profile. 348 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9180g00001 639 SUPERFAMILY Protein kinase-like (PK-like) 352 619 IPR011009 -
Vium9180g00001 639 Gene3D Transferase(Phosphotransferase) domain 1 424 637 - -
Vium9180g00001 639 FunFam Probable inactive receptor kinase RLK902 27 184 - -
Vium9180g00001 639 Pfam Protein kinase domain 352 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9180g00001 639 CDD STKc_IRAK 354 619 - -
Vium9180g00001 639 PANTHER OS05G0588300 PROTEIN 15 631 - -
Vium9180g00001 639 MobiDBLite consensus disorder prediction 619 639 - -
Vium9180g00001 639 Gene3D Phosphorylase Kinase; domain 1 314 423 - -
Vium9180g00001 639 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 424 630 - -
Vium9180g00001 639 Pfam Leucine Rich repeats (2 copies) 166 204 IPR025875 -
Vium9180g00001 639 Gene3D Ribonuclease Inhibitor 23 89 IPR032675 -
Vium9180g00001 639 Gene3D Ribonuclease Inhibitor 90 234 IPR032675 -
Vium9180g00001 639 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Vium9180g00001 639 ProSitePatterns Protein kinases ATP-binding region signature. 354 385 IPR017441 GO:0005524
Vium9180g00001 639 FunFam pollen receptor-like kinase 1 316 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9180g00001 Vium-Chr9180 17723 21815 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9180g00001 5 637 Receptor kinase-like Gene Family AT5G58300 58.216 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium9180g00001 Pkinase 5.6e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9180g00001 - - gmx:100818444 1132.47