Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9177g00002 ATGGTTTTTACTTCCATCCCAGCTTCTTATTTTGATGCATCCAATTGGCAGCAACAGCAACCAAATAACCAACCCGGAGGCAGTGACTCCAACTCTCAGCAGCTGCTTCAACCACCACCGCCACCACTTCCGGTTGCAATGCAGTCTCATGGAGAGGGTTCAATCAGGCCAGGATCCATGGCTGATAGGGCAAGGATGGCCAACATGCCAATGCCAGAGGTTGCACTCAAGTGTCCACGCTGCGAATCCACCAACACCAAATTTTGCTACTTCAACAACTACAGTCTCTCCCAGCCCCGCCACTTCTGCAAGACCTGCAGGAGGTACTGGACCAGAGGCGGCGCCTTAAGGAGTGTCCCCGTGGGCGGAGGCTGCAGGAGGAACAAGCGGAGCAAAGGTACCTGCGGCAGTGGCGGCGGCTCCAACTCTCCGGCAACCTCTGACCGCCAGACAGGAAGTGTCAATTCTACCAACTCGGGATCTTCGAAGAGTGAGAGAATAGGGCTTGCACCCCAAATTCCACCCTTCAGATTCATGCCTCCATTGCATCAACTTGGTGACTTTGGAGATGGAGACATAAGCCTAAACTATGGCCTCAGTTATGGCCCAGTGGGAGGAGTAGGAGACTTGGGTTATCAAATTGGAACAAGTGCTTTAGGTGGTGGTGCCACTTCAATCTTCTCTGCACCTGGTTTGGACCAATGGAGAATGCCACAGCAGTTTCCCCTCTTGGCCTCCTTGGAAGGTTCTTCACCAGCTTCTAATTTATACCCTTTTGAAGGTAGTGCTGAGGTGAGTGGATATATAAGGCCAAAGGTTTCAACTTCTGGGATCATGGCTCAGATAGCTTCGGTGAAAATGGAAGAACGTAAGGAACCTGATTTGTCAACACTTTTCTTGGGAAACGATAATCCAGTGAATGAACAATATTGGACCAGTGCTAGTTCTGCATCTTGGACAGATATTTGTGGGATTAGCTCCTCTTTCACTGCAAGCAACCATCTATAG 1008 0.502 MVFTSIPASYFDASNWQQQQPNNQPGGSDSNSQQLLQPPPPPLPVAMQSHGEGSIRPGSMADRARMANMPMPEVALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSKGTCGSGGGSNSPATSDRQTGSVNSTNSGSSKSERIGLAPQIPPFRFMPPLHQLGDFGDGDISLNYGLSYGPVGGVGDLGYQIGTSALGGGATSIFSAPGLDQWRMPQQFPLLASLEGSSPASNLYPFEGSAEVSGYIRPKVSTSGIMAQIASVKMEERKEPDLSTLFLGNDNPVNEQYWTSASSASWTDICGISSSFTASNHL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9177g00002 335 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Vium9177g00002 335 MobiDBLite consensus disorder prediction 13 59 - -
Vium9177g00002 335 Pfam Dof domain, zinc finger 75 130 IPR003851 GO:0003677|GO:0006355
Vium9177g00002 335 MobiDBLite consensus disorder prediction 120 167 - -
Vium9177g00002 335 MobiDBLite consensus disorder prediction 13 34 - -
Vium9177g00002 335 MobiDBLite consensus disorder prediction 134 166 - -
Vium9177g00002 335 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 40 162 IPR045174 GO:0003700|GO:0006355
Vium9177g00002 335 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9177g00002 Vium-Chr9177 10639 12313 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9177g00002 44 320 C2C2-Dof Transcription Factor Family AT3G55370 42.000 2.33e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium9177g00002 zf-Dof 6.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9177g00002 - - rcu:8279572 367.466