Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9174g00003 ATGGATGATGATGTGTTGAACATGCCCAATTGGGGTTATTATGAACCCTTCAGAGGGGGACATCTTGGTCTGCAGCTCATGCCTGGTATGACTGATCGAGACACCAAGCCATATCTGCCTGCTCGTGATCCAGCTGTGTTAATGGGTGCTAATGGAACTTTTCACCCTAGAGATTGCGTTGTTTCCGAAGCACCAATGCCGTTGAACTATGTCAGAGATAATTGGACAAGCCAAAGGGATAGGTATTTCAGTATGCAGCAGCCCACAAATCCTAATTATGCTGTTCTTCCTGAAACATCAGTAGCTCCCAACTTGCAAATTATACAACCACCCGATACATCCAGAGATGAGAAAGTGGATAGAATTGAAGAGTTAGTTGTCAAAAAGGAAGGTGGTCAGTCGAAGAAAAGGCAGACTAAGGGTGCTCTGACGACCCCAAAAGCTAAGAAACCTAGGAAGCCGAAGGATAATGGCAATGTTCCAGTTCAACGTGTGAAGCCCCCGAAGAAGACTATGGAGCTTGTAATTAATGGAATTGATATGGACATTTCTGGTCTGCCCATTCCTGTTTGTTCGTGTACCGGGAGTCCTCAGCAGTGTTACCGTTGGGGTTGTGGAGGTTGGCAATCGGCCTGTTGCACCACAAATGTGTCGATATATCCTTTGCCAATGAGCATGAAAAGGCGTGGTGCTAGGATAGCTGGGAGGAAAATGAGCCAAGGTGCGTTTAAAAAGGTTTTAGAGAAACTTGCGGCTGAAGGATATAATTTTGCTAACCCTATTGATCTGAAGACTCATTGGGCGAGACATGGCACCAACAAGTTTGTTACTATCAGGTAG 840 0.4548 MDDDVLNMPNWGYYEPFRGGHLGLQLMPGMTDRDTKPYLPARDPAVLMGANGTFHPRDCVVSEAPMPLNYVRDNWTSQRDRYFSMQQPTNPNYAVLPETSVAPNLQIIQPPDTSRDEKVDRIEELVVKKEGGQSKKRQTKGALTTPKAKKPRKPKDNGNVPVQRVKPPKKTMELVINGIDMDISGLPIPVCSCTGSPQQCYRWGCGGWQSACCTTNVSIYPLPMSMKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLKTHWARHGTNKFVTIR 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9174g00003 279 MobiDBLite consensus disorder prediction 128 166 - -
Vium9174g00003 279 Pfam GAGA binding protein-like family 1 279 IPR010409 -
Vium9174g00003 279 PANTHER - 1 279 IPR010409 -
Vium9174g00003 279 SMART GAGA_bind_2 1 279 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9174g00003 Vium-Chr9174 14632 16403 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9174g00003 1 279 BBR or BPC Transcription factor family AT2G01930 55.705 4.38e-104 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Vium9174g00003 GAGA_bind 2.6e-103 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9174g00003 - - gmx:100814354 551.592