LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium9174g00002	ATGCCCATACATACCCTATTTTTTAGCACTCTTTCTCTCTCTCCATTCCTATTGCGACTCTCTTCTCTCTCCTCTCTCTTCGCCTTTCTCTTTCTCTCTCTTTCAGATTTCTGTCTCTCTCATCTTTCTCTCTCCGGAAGGGCAAACCCTAAAGACCGTTTGCACCCACCAATTGCCATGGATGATGATGTGTTGAACATGCCCAATTGGGGTTATTATGAACCCTTCAGAGGGGGACATCTTGGTCTGCAGCTCATGCCTGGTATGACTGATCGAGACACCAAGCCATATCTGCCTGCTCGTGATCCAGCTGTGTTAATGGGTGCTAATGGAACTTTTCACCCTAGAGATTGCGTTGTTTCCGAAGCACCAATGCCGTTGAACTATGTCAGAGATAATTGGACAAGCCAAAGGGATAGGTATTTCAGTATGCAGCAGCCCACAAATCCTAATTATGCTGTTCTTCCTGAAACATCAGTAGCTCCCAACTTGCAAATTATACAACCACCCGATACATCCAGAGATGAGAAAGTGGATAGAATTGAAGAGTTAGTTGTCAAAAAGGAAGGTGGTCAGTCGAAGAAAAGGCAGACTAAGGGTGCTCTGACGACCCCAAAAGCTAAGAAACCTAGGAAGCCGAAGGATAATGGCAATGTTCCAGTTCAACGTGTGAAGCCCCCGAAGAAGACTATGGAGCTTGTAATTAATGGAATTGATATGGACATTTCTGGTCTGCCCATTCCTGTTTGTTCGTGTACCGGGAGTCCTCAGCAGTGTTACCGTTGGGGTTGTGGAGGTTGGCAATCGGCCTGTTGCACCACAAATGTGTCGATATATCCTTTGCCAATGAGCATGAAAAGGCGTGGTGCTAGGATAGCTGGGAGGAAAATGAGCCAAGGTGCGTTTAAAAAGGTTTTAGAGAAACTTGCGGCTGAAGGATATAATTTTGCTAACCCTATTGATCTGAAGACTCATTGGGCGAGACATGGCACCAACAAGTTTGTTACTATCAGGTAG	1017	0.4553	MPIHTLFFSTLSLSPFLLRLSSLSSLFAFLFLSLSDFCLSHLSLSGRANPKDRLHPPIAMDDDVLNMPNWGYYEPFRGGHLGLQLMPGMTDRDTKPYLPARDPAVLMGANGTFHPRDCVVSEAPMPLNYVRDNWTSQRDRYFSMQQPTNPNYAVLPETSVAPNLQIIQPPDTSRDEKVDRIEELVVKKEGGQSKKRQTKGALTTPKAKKPRKPKDNGNVPVQRVKPPKKTMELVINGIDMDISGLPIPVCSCTGSPQQCYRWGCGGWQSACCTTNVSIYPLPMSMKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLKTHWARHGTNKFVTIR	338

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium9174g00002	338	PANTHER	-	60	338	IPR010409	-
	Vium9174g00002	338	Pfam	GAGA binding protein-like family	60	338	IPR010409	-
	Vium9174g00002	338	SMART	GAGA_bind_2	60	338	IPR010409	-
	Vium9174g00002	338	MobiDBLite	consensus disorder prediction	186	226	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium9174g00002	Vium-Chr9174	14632	16600	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium9174g00002	60	338	BBR or BPC Transcription factor family	AT2G01930	55.705	1.66e-103	303

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	BBR-BPC	Vium9174g00002		GAGA_bind	5.2e-103	No_clan