Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9172g00004 ATGCCTCACAGAGCGACTTACTTTTTCCCGAGGCAGTTCCCCGAGAGAACTTTGGATGAGTCTTCGAAGCAGATATTGGATCATGAAAAGAGAAAAATCGTCAATTCTATCAAATCATCGGATACAACTTTTGAATATGAAAGCGACGCGCCGAAAAAGCCAGCACCGGTTCCCACGCGTGCCTCTAAAGACAACGACGACGTCGTTTTCTCATCCGGTAAGCAATCCGCAGTCTCCGACCTCTTCACTGGTGCCGACAAGTTCCGCACCAAACAGAAGCAAATCGCCGCCTTCTGCGATTGGTTGATCGACAAAAAGAAGGACCTCAATCGACCGAGTCACCGTTTAAGAACTTATCCTAACGACGACGAGGACGAAGAAGATGAACATGAGCATCTACTTCCTCCGCCGCCGCCTGAAGAAGCGGCGGCGGCGGCGCAGGTGGTGAAGGATGCTGTTGACCGGAGCTTCGACCGGCAGGTTTCGCTGCCGCGGTTGTCCAGCGGGAGCAGCTACGCCGGGAGCTTGTTCACGCTGGACGGCACCGCCACATTCTCCAGCGACGTTACGAAAGACGAAACGTCATCGTTTCAAGTCTTTACTGAAGAAGACGCGAGAAAAAGGAAAGAAGAGGAAGAAAACGTAAAACGCAATACGACGCAGAAGTATAAGGAGAGGTACTACCTGCAAATGGCTTTGGCGCAGAGACTCTCTTGTTTAGCAAGCCTCGCTTCTGAACCTGTTCTCGCACTCGACGCTGGTCCCGAAACCTGGGACGCTGAATCGGTTTCGTATCGTTTATGGGTGAGTGGATGTTTGTCGTACACGGACAAGATATCTGATGGTTTTTATAACATATTGGGGATGAATCCGTACCTTTGGGTGATGTGCAATGATGTCGAGGAAGAAGGGAAGCGTTTACCGACGCTGATGGCGCTTAAGGCGGTTGAACCAAGCGAGACCTCCATAGAGGTAGTTCTTTTCGATAGACACGAGGACTCTCGGCTTAAGGAGCTTCAAGATAAAGCTCAGGAGTTGTATTCTGCTTCGGAGAACGCGTTGGTGCTGGTGGAGAAACTCGGAAAACTCGTTGCCATATGCATGGGGGGTACGTTCCCTGTGGAGCAAGGAGATCTACACAAGCGGTGGAAGTTGGTTAGCAAGAGGTTGAGAAACTTTCACCAATGTGTTGTCCTTCCTGTTGGTAGCTTATCCAGTGGACTCTGTAGACATCGCGCGATTCTCTTCAAGAGATTGGCAGATTACATTGGTTTGCCATGCCGCATTGCTCGAGGTTGTAGGTACTGTGTTTCAGATCATAGATCGTCTTGCCTTGTCAAGATTAAAGATGACAGACAGCTCTCAAGAGAATATGTAGTTGATCTGGTTGGGGAGCCAGGAAATATCCTTGGGCCAGATTCCTCAATTAACGGAGCATATGCGTCATCAATACCTTCCCCATTTCAAATTTCTCATTTGAAAGAATCCCAATCTCCTTATGTGGATGTTACAGCATGTTCTCAATCTCTTGATAACACTTATTCAGGCTTTGTACATGAAGATCAACGAGTTGACGAAACTGATCGACTGAAAAATAATAATGGCTCTATTTATTCTGCAATAGATCAAACTCGTGGAGGTGTTTCTGAAGATCTTGGCGAAGTCTCTGGGGCATCGATTCATGAATACCCCAGGCTCTGTAAAGATTCAGTTGTAGTTATAGAAGCTTCCAAAGAGATCGTTGTAAAGGGGAGTTCTGGGGTAAAAAGCATCTATAAGCAATCCATACTGAGCTCATCCACCGAATCAGAACAGGAACACGTAAAAAATAAACTTGAAAATCAGGATACTGGTAATATTCCAAGATACTTGAATCTTGAACCATCACTTGCAATGGACTGGCTTGAGATACCCTGGGACGATTTACGAATCAAAGAGCGTGTTGGTGCTGGATCATTTGGGACAGTGTATCGTGCTGAATGGCATGGATCGGATGTTGCTGTCAAGGTTTTAACAGTTCAGGATTTCCAGGATGATCAGTTGAAAGAATTTCTGAGAGAGGTTGCAATAATGAAACGAGTTCGTCATCCAAATGTGGTACTTTTCATGGGTGCGGTTACTAAACGTCCACATCTATCTATAGTAACAGAATATTTGCCTAGGGGCAGTTTATTCCGCCTAATACATAAGCCAGCATCTGGTGAAATTCTAGATCCTAGGAGAAGGTTACGGATGGCTTTAGACGTGGCTAAAGGGATAAATTATCTCCACTGTCTGAAGCCTCCAATTGTGCACTGGGATCTCAAAACCCCGAACTTGTTAGTGGACAGAAATTGGACTGTCAAGGTGTGTGATTTTGGATTGTCCAGATTTAAGGCGAACACTTTCTTGTCATCAAAATCTGTTGCTGGAACTCCTGAGTGGATGGCTCCAGAATTTCTTCGTGGAGAACCTTCAAATGAGAAGTCTGATGTTTACAGTTTTGGAGTTATCCTGTGGGAACTTGTGACCCTGCAACAACCGTGGAATGGACTTAGTCATGCCCAGGTAGTTGGAGCTGTCGCCTTCCAGAATAGGAGGCTTGCTATCCCTCCAAACATTTCCCAAGCGTTGGCCTCTCTCATGGAAGCTTGTTGGGCTGATAAACCTGCTGATCGCCCATCATTTGCAAGCATAGTTGATTCTCTAAAGAAGCTACTGAAGTCACCAGCTGATGCGATTAAAATGGGTGGAAAATAA 2739 0.4626 MPHRATYFFPRQFPERTLDESSKQILDHEKRKIVNSIKSSDTTFEYESDAPKKPAPVPTRASKDNDDVVFSSGKQSAVSDLFTGADKFRTKQKQIAAFCDWLIDKKKDLNRPSHRLRTYPNDDEDEEDEHEHLLPPPPPEEAAAAAQVVKDAVDRSFDRQVSLPRLSSGSSYAGSLFTLDGTATFSSDVTKDETSSFQVFTEEDARKRKEEEENVKRNTTQKYKERYYLQMALAQRLSCLASLASEPVLALDAGPETWDAESVSYRLWVSGCLSYTDKISDGFYNILGMNPYLWVMCNDVEEEGKRLPTLMALKAVEPSETSIEVVLFDRHEDSRLKELQDKAQELYSASENALVLVEKLGKLVAICMGGTFPVEQGDLHKRWKLVSKRLRNFHQCVVLPVGSLSSGLCRHRAILFKRLADYIGLPCRIARGCRYCVSDHRSSCLVKIKDDRQLSREYVVDLVGEPGNILGPDSSINGAYASSIPSPFQISHLKESQSPYVDVTACSQSLDNTYSGFVHEDQRVDETDRLKNNNGSIYSAIDQTRGGVSEDLGEVSGASIHEYPRLCKDSVVVIEASKEIVVKGSSGVKSIYKQSILSSSTESEQEHVKNKLENQDTGNIPRYLNLEPSLAMDWLEIPWDDLRIKERVGAGSFGTVYRAEWHGSDVAVKVLTVQDFQDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLFRLIHKPASGEILDPRRRLRMALDVAKGINYLHCLKPPIVHWDLKTPNLLVDRNWTVKVCDFGLSRFKANTFLSSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTLQQPWNGLSHAQVVGAVAFQNRRLAIPPNISQALASLMEACWADKPADRPSFASIVDSLKKLLKSPADAIKMGGK 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9172g00004 912 Coils Coil 202 222 - -
Vium9172g00004 912 ProSitePatterns Serine/Threonine protein kinases active-site signature. 763 775 IPR008271 GO:0004672|GO:0006468
Vium9172g00004 912 ProSitePatterns Protein kinases ATP-binding region signature. 648 669 IPR017441 GO:0005524
Vium9172g00004 912 ProSiteProfiles Protein kinase domain profile. 642 900 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9172g00004 912 Pfam Protein tyrosine and serine/threonine kinase 642 896 IPR001245 GO:0004672|GO:0006468
Vium9172g00004 912 SMART serkin_6 642 900 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9172g00004 912 CDD STKc_MAP3K-like 648 896 - -
Vium9172g00004 912 MobiDBLite consensus disorder prediction 38 67 - -
Vium9172g00004 912 PRINTS Tyrosine kinase catalytic domain signature 716 729 IPR001245 GO:0004672|GO:0006468
Vium9172g00004 912 PRINTS Tyrosine kinase catalytic domain signature 867 889 IPR001245 GO:0004672|GO:0006468
Vium9172g00004 912 PRINTS Tyrosine kinase catalytic domain signature 823 845 IPR001245 GO:0004672|GO:0006468
Vium9172g00004 912 PRINTS Tyrosine kinase catalytic domain signature 757 775 IPR001245 GO:0004672|GO:0006468
Vium9172g00004 912 MobiDBLite consensus disorder prediction 112 141 - -
Vium9172g00004 912 SUPERFAMILY Protein kinase-like (PK-like) 619 895 IPR011009 -
Vium9172g00004 912 Gene3D Transferase(Phosphotransferase) domain 1 721 908 - -
Vium9172g00004 912 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 197 901 - -
Vium9172g00004 912 Pfam Ethylene-responsive protein kinase Le-CTR1 260 469 - -
Vium9172g00004 912 Gene3D Phosphorylase Kinase; domain 1 635 719 - -
Vium9172g00004 912 FunFam Serine/threonine-protein kinase isoform 1 632 720 - -
Vium9172g00004 912 FunFam Serine/threonine-protein kinase CTR1 721 906 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9172g00004 Vium-Chr9172 5408 11721 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9172g00004 1 911 MAP Kinase Kinase Kinase AT4G24480 58.159 0.0 1031
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vium9172g00004 PK_Tyr_Ser-Thr 9.4e-66 CL0016