Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9172g00003 ATGCCTCACAGAGCGACTTACTTTTTCCCGAGGCAGTTCCCCGAGAGAACTTTGGATGAGTCTTCGAAGCAGATATTGGATCATGAAAAGAGAAAAATCGTCAATTCTATCAAATCATCGGATACAACTTTTGAATATGAAAGCGACGCGCCGAAAAAGCCAGCACCGGTTCCCACGCGTGCCTCTAAAGACAACGACGACGTCGTTTTCTCATCCGGTAAGCAATCCGCAGTCTCCGACCTCTTCACTGGTGCCGACAAGTTCCGCACCAAACAGAAGCAAATCGCCGCCTTCTGCGATTGGTTGATCGACAAAAAGAAGGACCTCAATCGACCGAGTCACCGTTTAAGAACTTATCCTAACGACGACGAGGACGAAGAAGATGAACATGAGCATCTACTTCCTCCGCCGCCGCCTGAAGAAGCGGCGGCGGCGGCGCAGGTGGTGAAGGATGCTGTTGACCGGAGCTTCGACCGGCAGGTTTCGCTGCCGCGGTTGTCCAGCGGGAGCAGCTACGCCGGGAGCTTGTTCACGCTGGACGGCACCGCCACATTCTCCAGCGACGTTACGAAAGACGAAACGTCATCGTTTCAAGTCTTTACTGAAGAAGACGCGAGAAAAAGGAAAGAAGAGGAAGAAAACGTAAAACGCAATACGACGCAGAAGTATAAGGAGAGGTACTACCTGCAAATGGCTTTGGCGCAGAGACTCTCTTGTTTAGCAAGCCTCGCTTCTGAACCTGTTCTCGCACTCGACGCTGGTCCCGAAACCTGGGACGCTGAATCGGTTTCGTATCGTTTATGGGTGAGTGGATGTTTGTCGTACACGGACAAGATATCTGATGGTTTTTATAACATATTGGGGATGAATCCGTACCTTTGGGTGATGTGCAATGATGTCGAGGAAGAAGGGAAGCGTTTACCGACGCTGATGGCGCTTAAGGCGGTTGAACCAAGCGAGACCTCCATAGAGGTAGTTCTTTTCGATAGACACGAGGACTCTCGGCTTAAGGAGCTTCAAGATAAAGCTCAGGAGTTGTATTCTGCTTCGGAGAACGCGTTGGTGCTGGTGGAGAAACTCGGAAAACTCGTTGCCATATGCATGGGGGGTACGTTCCCTGTGGAGCAAGGAGATCTACACAAGCGGTGGAAGTTGGTTAGCAAGAGGTTGAGAAACTTTCACCAATGTGTTGTCCTTCCTGTTGGTAGCTTATCCAGTGGACTCTGTAGACATCGCGCGATTCTCTTCAAGAGATTGGCAGATTACATTGGTTTGCCATGCCGCATTGCTCGAGGTTGTAGGTACTGTGTTTCAGATCATAGATCGTCTTGCCTTGTCAAGATTAAAGATGACAGACAGCTCTCAAGAGAATATGTAGTTGATCTGGTTGGGGAGCCAGGAAATATCCTTGGGCCAGATTCCTCAATTAACGGAGCATATGCGTCATCAATACCTTCCCCATTTCAAATTTCTCATTTGAAAGAATCCCAATCTCCTTATGTGGATGTTACAGCATGTTCTCAATCTCTTGATAACACTTATTCAGGCTTTGTACATGAAGATCAACGAGTTGACGAAACTGATCGACTGAAAAATAATAATGGCTCTATTTATTCTGCAATAGATCAAACTCGTGGAGGTACAGAGCAACCTCTATTTCCTTGTGGCTTGAAAGGGAATGATAAGGAATGTGCTGTTCTGGGTTTATTAAATTTTCCTCCCATCCATGAAGGTGTTTCTGAAGATCTTGGCGAAGTCTCTGGGGCATCGATTCATGAATACCCCAGGCTCTGTAAAGATTCAGTTGTAGTTATAGAAGCTTCCAAAGAGATCGTTGTAAAGGGGAGTTCTGGGGTAAAAAGCATCTATAAGCAATCCATACTGAGCTCATCCACCGAATCAGAACAGGAACACGTAAAAAATAAACTTGAAAATCAGGATACTGGTAATATTCCAAGATACTTGAATCTTGAACCATCACTTGCAATGGACTGGCTTGAGATACCCTGGGACGATTTACGAATCAAAGAGCGTGTTGGTGCTGGATCATTTGGGACAGTGTATCGTGCTGAATGGCATGGATCGGATGTTGCTGTCAAGGTTTTAACAGTTCAGGATTTCCAGGATGATCAGTTGAAAGAATTTCTGAGAGAGGTTGCAATAATGAAACGAGTTCGTCATCCAAATGTGGTACTTTTCATGGGTGCGGTTACTAAACGTCCACATCTATCTATAGTAACAGAATATTTGCCTAGGGGCAGTTTATTCCGCCTAATACATAAGCCAGCATCTGGTGAAATTCTAGATCCTAGGAGAAGGTTACGGATGGCTTTAGACGTGGCTAAAGGGATAAATTATCTCCACTGTCTGAAGCCTCCAATTGTGCACTGGGATCTCAAAACCCCGAACTTGTTAGTGGACAGAAATTGGACTGTCAAGCCTGAGTGGATGGCTCCAGAATTTCTTCGTGGAGAACCTTCAAATGAGAAGTCTGATGTTTACAGTTTTGGAGTTATCCTGTGGGAACTTGTGACCCTGCAACAACCGTGGAATGGACTTAGTCATGCCCAGGTAGTTGGAGCTGTCGCCTTCCAGAATAGGAGGCTTGCTATCCCTCCAAACATTTCCCAAGCGTTGGCCTCTCTCATGGAAGCTTGTTGGGCTGATAAACCTGCTGATCGCCCATCATTTGCAAGCATAGTTGATTCTCTAAAGAAGCTACTGAAGTCACCAGCTGATGCGATTAAAATGGGTGGAAAATAA 2763 0.4625 MPHRATYFFPRQFPERTLDESSKQILDHEKRKIVNSIKSSDTTFEYESDAPKKPAPVPTRASKDNDDVVFSSGKQSAVSDLFTGADKFRTKQKQIAAFCDWLIDKKKDLNRPSHRLRTYPNDDEDEEDEHEHLLPPPPPEEAAAAAQVVKDAVDRSFDRQVSLPRLSSGSSYAGSLFTLDGTATFSSDVTKDETSSFQVFTEEDARKRKEEEENVKRNTTQKYKERYYLQMALAQRLSCLASLASEPVLALDAGPETWDAESVSYRLWVSGCLSYTDKISDGFYNILGMNPYLWVMCNDVEEEGKRLPTLMALKAVEPSETSIEVVLFDRHEDSRLKELQDKAQELYSASENALVLVEKLGKLVAICMGGTFPVEQGDLHKRWKLVSKRLRNFHQCVVLPVGSLSSGLCRHRAILFKRLADYIGLPCRIARGCRYCVSDHRSSCLVKIKDDRQLSREYVVDLVGEPGNILGPDSSINGAYASSIPSPFQISHLKESQSPYVDVTACSQSLDNTYSGFVHEDQRVDETDRLKNNNGSIYSAIDQTRGGTEQPLFPCGLKGNDKECAVLGLLNFPPIHEGVSEDLGEVSGASIHEYPRLCKDSVVVIEASKEIVVKGSSGVKSIYKQSILSSSTESEQEHVKNKLENQDTGNIPRYLNLEPSLAMDWLEIPWDDLRIKERVGAGSFGTVYRAEWHGSDVAVKVLTVQDFQDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLFRLIHKPASGEILDPRRRLRMALDVAKGINYLHCLKPPIVHWDLKTPNLLVDRNWTVKPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTLQQPWNGLSHAQVVGAVAFQNRRLAIPPNISQALASLMEACWADKPADRPSFASIVDSLKKLLKSPADAIKMGGK 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9172g00003 920 Coils Coil 202 222 - -
Vium9172g00003 920 FunFam Serine/threonine-protein kinase isoform 1 663 751 - -
Vium9172g00003 920 ProSitePatterns Protein kinases ATP-binding region signature. 679 700 IPR017441 GO:0005524
Vium9172g00003 920 Gene3D Transferase(Phosphotransferase) domain 1 814 917 - -
Vium9172g00003 920 ProSiteProfiles Protein kinase domain profile. 673 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9172g00003 920 ProSitePatterns Serine/Threonine protein kinases active-site signature. 794 806 IPR008271 GO:0004672|GO:0006468
Vium9172g00003 920 Gene3D Transferase(Phosphotransferase) domain 1 751 813 - -
Vium9172g00003 920 Gene3D Phosphorylase Kinase; domain 1 666 750 - -
Vium9172g00003 920 Pfam Protein tyrosine and serine/threonine kinase 673 813 IPR001245 GO:0004672|GO:0006468
Vium9172g00003 920 MobiDBLite consensus disorder prediction 38 67 - -
Vium9172g00003 920 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 197 909 - -
Vium9172g00003 920 SUPERFAMILY Protein kinase-like (PK-like) 650 903 IPR011009 -
Vium9172g00003 920 MobiDBLite consensus disorder prediction 112 141 - -
Vium9172g00003 920 Pfam Ethylene-responsive protein kinase Le-CTR1 260 469 - -
Vium9172g00003 920 CDD STKc_MAP3K-like 679 904 - -
Vium9172g00003 920 SMART serkin_6 673 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9172g00003 Vium-Chr9172 5408 11722 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9172g00003 1 919 MAP Kinase Kinase Kinase AT4G24480 54.573 0.0 969
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vium9172g00003 EDR1 1.1e-74 CL0125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9172g00003 - - gmx:100786546 1558.12