Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9172g00002 ATGCCTCACAGAGCGACTTACTTTTTCCCGAGGCAGTTCCCCGAGAGAACTTTGGATGAGTCTTCGAAGCAGATATTGGATCATGAAAAGAGAAAAATCGTCAATTCTATCAAATCATCGGATACAACTTTTGAATATGAAAGCGACGCGCCGAAAAAGCCAGCACCGGTTCCCACGCGTGCCTCTAAAGACAACGACGACGTCGTTTTCTCATCCGGTAAGCAATCCGCAGTCTCCGACCTCTTCACTGGTGCCGACAAGTTCCGCACCAAACAGAAGCAAATCGCCGCCTTCTGCGATTGGTTGATCGACAAAAAGAAGGACCTCAATCGACCGAGTCACCGTTTAAGAACTTATCCTAACGACGACGAGGACGAAGAAGATGAACATGAGCATCTACTTCCTCCGCCGCCGCCTGAAGAAGCGGCGGCGGCGGCGCAGGTGGTGAAGGATGCTGTTGACCGGAGCTTCGACCGGCAGGTTTCGCTGCCGCGGTTGTCCAGCGGGAGCAGCTACGCCGGGAGCTTGTTCACGCTGGACGGCACCGCCACATTCTCCAGCGACGTTACGAAAGACGAAACGTCATCGTTTCAAGTCTTTACTGAAGAAGACGCGAGAAAAAGGAAAGAAGAGGAAGAAAACGTAAAACGCAATACGACGCAGAAGTATAAGGAGAGGTACTACCTGCAAATGGCTTTGGCGCAGAGACTCTCTTGTTTAGCAAGCCTCGCTTCTGAACCTGTTCTCGCACTCGACGCTGGTCCCGAAACCTGGGACGCTGAATCGGTTTCGTATCGTTTATGGGTGAGTGGATGTTTGTCGTACACGGACAAGATATCTGATGGTTTTTATAACATATTGGGGATGAATCCGTACCTTTGGGTGATGTGCAATGATGTCGAGGAAGAAGGGAAGCGTTTACCGACGCTGATGGCGCTTAAGGCGGTTGAACCAAGCGAGACCTCCATAGAGGTAGTTCTTTTCGATAGACACGAGGACTCTCGGCTTAAGGAGCTTCAAGATAAAGCTCAGGAGTTGTATTCTGCTTCGGAGAACGCGTTGGTGCTGGTGGAGAAACTCGGAAAACTCGTTGCCATATGCATGGGGGGTACGTTCCCTGTGGAGCAAGGAGATCTACACAAGCGGTGGAAGTTGGTTAGCAAGAGGTTGAGAAACTTTCACCAATGTGTTGTCCTTCCTGTTGGTAGCTTATCCAGTGGACTCTGTAGACATCGCGCGATTCTCTTCAAGAGATTGGCAGATTACATTGGTTTGCCATGCCGCATTGCTCGAGGTTGTAGGTACTGTGTTTCAGATCATAGATCGTCTTGCCTTGTCAAGATTAAAGATGACAGACAGCTCTCAAGAGAATATGTAGTTGATCTGGTTGGGGAGCCAGGAAATATCCTTGGGCCAGATTCCTCAATTAACGGAGCATATGCGTCATCAATACCTTCCCCATTTCAAATTTCTCATTTGAAAGAATCCCAATCTCCTTATGTGGATGTTACAGCATGTTCTCAATCTCTTGATAACACTTATTCAGGCTTTGTACATGAAGATCAACGAGTTGACGAAACTGATCGACTGAAAAATAATAATGGCTCTATTTATTCTGCAATAGATCAAACTCGTGGAGGTACAGAGCAACCTCTATTTCCTTGTGGCTTGAAAGGGAATGATAAGGAATGTGCTGTTCTGGGTTTATTAAATTTTCCTCCCATCCATGAAGGTGTTTCTGAAGATCTTGGCGAAGTCTCTGGGGCATCGATTCATGAATACCCCAGGCTCTGTAAAGATTCAGTTGTAGTTATAGAAGCTTCCAAAGAGATCGTTGTAAAGGGGAGTTCTGGGGTAAAAAGCATCTATAAGCAATCCATACTGAGCTCATCCACCGAATCAGAACAGGAACACGTAAAAAATAAACTTGAAAATCAGGATACTGGTAATATTCCAAGATACTTGAATCTTGAACCATCACTTGCAATGGACTGGCTTGAGATACCCTGGGACGATTTACGAATCAAAGAGCGTGTTGGTGCTGGATCATTTGGGACAGTGTATCGTGCTGAATGGCATGGATCGGATGTTGCTGTCAAGGTTTTAACAGTTCAGGATTTCCAGGATGATCAGTTGAAAGAATTTCTGAGAGAGGTTGCAATAATGAAACGAGTTCGTCATCCAAATGTGGTACTTTTCATGGGTGCGGTTACTAAACGTCCACATCTATCTATAGTAACAGAATATTTGCCTAGGGGCAGTTTATTCCGCCTAATACATAAGCCAGCATCTGGTGAAATTCTAGATCCTAGGAGAAGGTTACGGATGGCTTTAGACGTGGCTAAAGGGATAAATTATCTCCACTGTCTGAAGCCTCCAATTGTGCACTGGGATCTCAAAACCCCGAACTTGTTAGTGGACAGAAATTGGACTGTCAAGGTGTGTGATTTTGGATTGTCCAGATTTAAGGCGAACACTTTCTTGTCATCAAAATCTGTTGCTGGAACTCCTGAGTGGATGGCTCCAGAATTTCTTCGTGGAGAACCTTCAAATGAGAAGTCTGATGTTTACAGTTTTGGAGTTATCCTGTGGGAACTTGTGACCCTGCAACAACCGTGGAATGGACTTAGTCATGCCCAGGTAGTTGGAGCTGTCGCCTTCCAGAATAGGAGGCTTGCTATCCCTCCAAACATTTCCCAAGCGTTGGCCTCTCTCATGGAAGCTTGTTGGGCTGATAAACCTGCTGATCGCCCATCATTTGCAAGCATAGTTGATTCTCTAAAGAAGCTACTGAAGTCACCAGCTGATGCGATTAAAATGGGTGGAAAATAA 2832 0.4608 MPHRATYFFPRQFPERTLDESSKQILDHEKRKIVNSIKSSDTTFEYESDAPKKPAPVPTRASKDNDDVVFSSGKQSAVSDLFTGADKFRTKQKQIAAFCDWLIDKKKDLNRPSHRLRTYPNDDEDEEDEHEHLLPPPPPEEAAAAAQVVKDAVDRSFDRQVSLPRLSSGSSYAGSLFTLDGTATFSSDVTKDETSSFQVFTEEDARKRKEEEENVKRNTTQKYKERYYLQMALAQRLSCLASLASEPVLALDAGPETWDAESVSYRLWVSGCLSYTDKISDGFYNILGMNPYLWVMCNDVEEEGKRLPTLMALKAVEPSETSIEVVLFDRHEDSRLKELQDKAQELYSASENALVLVEKLGKLVAICMGGTFPVEQGDLHKRWKLVSKRLRNFHQCVVLPVGSLSSGLCRHRAILFKRLADYIGLPCRIARGCRYCVSDHRSSCLVKIKDDRQLSREYVVDLVGEPGNILGPDSSINGAYASSIPSPFQISHLKESQSPYVDVTACSQSLDNTYSGFVHEDQRVDETDRLKNNNGSIYSAIDQTRGGTEQPLFPCGLKGNDKECAVLGLLNFPPIHEGVSEDLGEVSGASIHEYPRLCKDSVVVIEASKEIVVKGSSGVKSIYKQSILSSSTESEQEHVKNKLENQDTGNIPRYLNLEPSLAMDWLEIPWDDLRIKERVGAGSFGTVYRAEWHGSDVAVKVLTVQDFQDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLFRLIHKPASGEILDPRRRLRMALDVAKGINYLHCLKPPIVHWDLKTPNLLVDRNWTVKVCDFGLSRFKANTFLSSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTLQQPWNGLSHAQVVGAVAFQNRRLAIPPNISQALASLMEACWADKPADRPSFASIVDSLKKLLKSPADAIKMGGK 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9172g00002 943 Coils Coil 202 222 - -
Vium9172g00002 943 Gene3D Phosphorylase Kinase; domain 1 666 750 - -
Vium9172g00002 943 Pfam Protein tyrosine and serine/threonine kinase 673 927 IPR001245 GO:0004672|GO:0006468
Vium9172g00002 943 ProSitePatterns Protein kinases ATP-binding region signature. 679 700 IPR017441 GO:0005524
Vium9172g00002 943 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 197 932 - -
Vium9172g00002 943 PRINTS Tyrosine kinase catalytic domain signature 854 876 IPR001245 GO:0004672|GO:0006468
Vium9172g00002 943 PRINTS Tyrosine kinase catalytic domain signature 788 806 IPR001245 GO:0004672|GO:0006468
Vium9172g00002 943 PRINTS Tyrosine kinase catalytic domain signature 898 920 IPR001245 GO:0004672|GO:0006468
Vium9172g00002 943 PRINTS Tyrosine kinase catalytic domain signature 747 760 IPR001245 GO:0004672|GO:0006468
Vium9172g00002 943 CDD STKc_MAP3K-like 679 927 - -
Vium9172g00002 943 ProSitePatterns Serine/Threonine protein kinases active-site signature. 794 806 IPR008271 GO:0004672|GO:0006468
Vium9172g00002 943 ProSiteProfiles Protein kinase domain profile. 673 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9172g00002 943 Gene3D Transferase(Phosphotransferase) domain 1 752 939 - -
Vium9172g00002 943 Pfam Ethylene-responsive protein kinase Le-CTR1 260 469 - -
Vium9172g00002 943 SUPERFAMILY Protein kinase-like (PK-like) 650 926 IPR011009 -
Vium9172g00002 943 MobiDBLite consensus disorder prediction 38 67 - -
Vium9172g00002 943 FunFam Serine/threonine-protein kinase CTR1 752 937 - -
Vium9172g00002 943 MobiDBLite consensus disorder prediction 112 141 - -
Vium9172g00002 943 FunFam Serine/threonine-protein kinase isoform 1 663 751 - -
Vium9172g00002 943 SMART serkin_6 673 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9172g00002 Vium-Chr9172 5408 11724 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9172g00002 1 942 MAP Kinase Kinase Kinase AT4G24480 56.707 0.0 1025
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vium9172g00002 PK_Tyr_Ser-Thr 1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9172g00002 - - gmx:100786546 1615.9