Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9170g00001 ATGTATTCTCATAATGCAACCGGCAGCAGCAGAGCCTCTTCCGAAACCGCCCGCTACCGCGGCGTGCGCCGGAGGAGCAACGGAAAATGGGTGTCTGAGATCCGTGAGCCAAGAAAGCCCACCAGGATTTGGTTAGGCACATTTCCCACACCTGAAATGGCCGCAGTGGCTTATGACGTGGCAGCTTATGCTCTCAAGGGTAAGGATGCGGAGCTGAATTTCCCTGACTCCGCTTCCTCCCTTCCTGTCCCCGATTCACTCTCGGCGCGTGATATTCAGATGGCGGCAGCCGCTGCGGCGGCGGCTGCCGGAGCTGCGAAGGATGCTATGCAGACGCCAACGAATAATAACTCTTCAGGGGTACAAGAGAAGCAAGCAGGGACGAGTAACGAGTTCGTGGACGAGGATTTGATCTTTGACATGCCTAATGTTCTGGTTAATATGGCTGAGGGAATGCTGCTTAGTCCTCCTCCTTTTGACATTGGTCTGGAACCTAACAGCCCAGAAAACATGGAACATGAGACAAGCCTGTGGAATTTCCCTTAA 546 0.5366 MYSHNATGSSRASSETARYRGVRRRSNGKWVSEIREPRKPTRIWLGTFPTPEMAAVAYDVAAYALKGKDAELNFPDSASSLPVPDSLSARDIQMAAAAAAAAAGAAKDAMQTPTNNNSSGVQEKQAGTSNEFVDEDLIFDMPNVLVNMAEGMLLSPPPFDIGLEPNSPENMEHETSLWNFP 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9170g00001 181 Gene3D AP2/ERF domain 17 76 IPR036955 GO:0003700|GO:0006355
Vium9170g00001 181 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 17 179 IPR045277 GO:0003700
Vium9170g00001 181 FunFam Ethylene-responsive transcription factor 2 17 76 - -
Vium9170g00001 181 CDD AP2 17 77 IPR001471 GO:0003700|GO:0006355
Vium9170g00001 181 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Vium9170g00001 181 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Vium9170g00001 181 MobiDBLite consensus disorder prediction 1 16 - -
Vium9170g00001 181 MobiDBLite consensus disorder prediction 1 28 - -
Vium9170g00001 181 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Vium9170g00001 181 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Vium9170g00001 181 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Vium9170g00001 181 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9170g00001 Vium-Chr9170 2591 3662 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9170g00001 19 181 AP2-EREBP Transcription Factor Family AT2G36450 62.428 7.62e-51 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium9170g00001 AP2 3.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9170g00001 - - pvu:PHAVU_007G222600g 321.627