Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9169g00008 ATGGAATGCGAAGGGAAATTCAGAGAGAAATTGGTGAAGGTGGTGGGAGTGGGAAAACTCTGCTATCTTTTGAAAGCGAAAATCGGAGAGGGTTCATACTCCTTAGTGTGGAGAGCGGAGCAGAGACAAACCGGCGATGACGTGGCGGTGAAGCAGGTCTTCCTCTCCAAACTCAACCCTCGCCTCAAGGCTTGTTTGGATTGCGAGATCAACTTCTTGTCCTCTGTTAACCACCCCAATATTATTCGTCTTCTTCACTTCTTCCAGGATGATGGATGTCTGTACCTTGTCCTTGAGTTTTGTGCTGGAGGCAACCTAGCTTCTTATATTCGAAGCCATGGAAGAGTTCAACAACAAACTGCTAGAAAATTCATGCACCAGCTTGGCTCTGGTCTCCTAGTATTGCACTCTCACGGCATCATTCACAGAGACTTGAAACCGGAGAACATTTTGCTATCAAGCCATGAGGGTGATGCAAAGCTAAAGATAGCCGATTTTGGTCTCTCAAGGACTGTGCGCCCAGGTGAATATGCGGAGACAGTTTGTGGTTCTCCGTTGTACATGGCTCCAGAAGTTCTTCAGTTCCAGAGATATGATGACAAGGTGCTGAAAAACATCAGATCCTGCAACTGTCTTCCATTTTCTCAACTTATTCTTTCAGGATTGGATCCGGACTGTCTTGATATTTGTTCAAAGCTACTACACTTAAATCCAGTGGAACGCCTATCTGTTGATGAATTTTATTGGCATAGTTTTCTTCAAAGAAAAGTGAGGAGAACATGA 783 0.447 MECEGKFREKLVKVVGVGKLCYLLKAKIGEGSYSLVWRAEQRQTGDDVAVKQVFLSKLNPRLKACLDCEINFLSSVNHPNIIRLLHFFQDDGCLYLVLEFCAGGNLASYIRSHGRVQQQTARKFMHQLGSGLLVLHSHGIIHRDLKPENILLSSHEGDAKLKIADFGLSRTVRPGEYAETVCGSPLYMAPEVLQFQRYDDKVLKNIRSCNCLPFSQLILSGLDPDCLDICSKLLHLNPVERLSVDEFYWHSFLQRKVRRT 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9169g00008 260 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Vium9169g00008 260 SUPERFAMILY Protein kinase-like (PK-like) 22 255 IPR011009 -
Vium9169g00008 260 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 21 254 IPR045269 GO:0004674|GO:0006914
Vium9169g00008 260 FunFam Aurora kinase A 19 104 - -
Vium9169g00008 260 Pfam Protein kinase domain 24 202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9169g00008 260 Gene3D Transferase(Phosphotransferase) domain 1 199 260 - -
Vium9169g00008 260 Gene3D Transferase(Phosphotransferase) domain 1 13 198 - -
Vium9169g00008 260 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Vium9169g00008 260 SMART serkin_6 22 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9169g00008 260 ProSiteProfiles Protein kinase domain profile. 22 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9169g00008 Vium-Chr9169 26054 28663 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9169g00008 13 222 CBL-interacting serine-threonine protein kinases AT5G35410 39.819 9.40e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Vium9169g00008 Pkinase 9.5e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9169g00008 - - lja:Lj1g3v1289070.2 397.512