Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9169g00007 ATGGAATGCGAAGGGAAATTCAGAGAGAAATTGGTGAAGGTGGTGGGAGTGGGAAAACTCTGCTATCTTTTGAAAGCGAAAATCGGAGAGGGTTCATACTCCTTAGTGTGGAGAGCGGAGCAGAGACAAACCGGCGATGACGTGGCGGTGAAGCAGGTCTTCCTCTCCAAACTCAACCCTCGCCTCAAGGCTTGTTTGGATTGCGAGATCAACTTCTTGTCCTCTGTTAACCACCCCAATATTATTCGTCTTCTTCACTTCTTCCAGGATGATGGATGTCTGTACCTTGTCCTTGAGTTTTGTGCTGGAGGCAACCTAGCTTCTTATATTCGAAGCCATGGAAGAGTTCAACAACAAACTGCTAGAAAATTCATGCACCAGCTTGGCTCTGGTCTCCTAGTATTGCACTCTCACGGCATCATTCACAGAGACTTGAAACCGGAGCATTTTCATAAAATGTGGAGGACTGTGCGCCCAGGTGAATATGCGGAGACAGTTTGTGGTTCTCCGTTGTACATGGCTCCAGAAGTTCTTCAGTTCCAGAGATATGATGACAAGGCAGACATGTGGAGTGTTGGAGCTATTTTTTTTGAGCTTCTAAATGGATACCCACCTTTTAATGGCAAAAATAGTGTTCAGGTGCTGAAAAACATCAGATCCTGCAACTGTCTTCCATTTTCTCAACTTATTCTTTCAGGATTGGATCCGGACTGTCTTGATATTTGTTCAAAGCTACTACACTTAAATCCAGTGGAACGCCTATCTGTTGATGAATTTTATTGGCATAGTTTTCTTCAAAGAAAAGTGAGGAGAACATGA 819 0.4396 MECEGKFREKLVKVVGVGKLCYLLKAKIGEGSYSLVWRAEQRQTGDDVAVKQVFLSKLNPRLKACLDCEINFLSSVNHPNIIRLLHFFQDDGCLYLVLEFCAGGNLASYIRSHGRVQQQTARKFMHQLGSGLLVLHSHGIIHRDLKPEHFHKMWRTVRPGEYAETVCGSPLYMAPEVLQFQRYDDKADMWSVGAIFFELLNGYPPFNGKNSVQVLKNIRSCNCLPFSQLILSGLDPDCLDICSKLLHLNPVERLSVDEFYWHSFLQRKVRRT 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9169g00007 272 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Vium9169g00007 272 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 21 266 IPR045269 GO:0004674|GO:0006914
Vium9169g00007 272 SUPERFAMILY Protein kinase-like (PK-like) 22 267 IPR011009 -
Vium9169g00007 272 Gene3D Transferase(Phosphotransferase) domain 1 19 151 - -
Vium9169g00007 272 Gene3D Transferase(Phosphotransferase) domain 1 153 272 - -
Vium9169g00007 272 Pfam Protein kinase domain 24 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9169g00007 272 ProSiteProfiles Protein kinase domain profile. 22 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9169g00007 272 FunFam Aurora kinase A 19 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9169g00007 Vium-Chr9169 26054 28665 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9169g00007 22 259 CBL-interacting serine-threonine protein kinases AT2G30360 33.203 4.01e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Vium9169g00007 Pkinase 1.4e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9169g00007 - - lja:Lj1g3v1289070.2 419.853