Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9169g00003 ATGAACTTGATTACTGAGTTATTCACCTCAGGGAACCTCAGACAGTACAGCAAGAAACACAGGAGGGTTGACATGAAGGCTGTTAAAGGATGGGCAAGGCAAATTTTAAATGGTTTAAATTATCTTCACAGTCACAACCCACCTATTATGCATAGGGACCTGAAGTGTGATAATATATTCATCAATGGTCACCGAGGAGAAGTTAAGATTGGAGATCTAGGGTTGGCAACTCTAATCAAACAAACCAATGCCAGGAGTGTAATTGGAACCCCGGAGTTCATGGCACCTGAACTGTATGATGAACATTATAATGAATTAGTGGACATATATTCTTTTGGGATGTGCATGCTTGAGTTGGTTACGTCTGAATATCCTTACAGTGAATGTAGAAACTCAGCTCAGATATACAAGAAAGTTTCATCTGGCATTAAGCCTGTTGCTCTTTCCAAACTCAAAAATCAAGAAGTAAAATCATTTATTGAGAAATGTCTTGTCCCAGCGTCTCAAAGACTGACAGCAAAGGAGCTTTTGATGGACAATTTTCTGCAAGTGACTGGTTCATTGAAGAATCGTCGTCTACCATTACCAGATATCGTTCTCCCTAAGTATGGAGCCTATGAAAATCGTTGTCTTATGTCAGAAGGTCCTGCTAGTACGCGTATTAGATCCATTTCAATGGATCTTGGTGATGCCACCGAGCAACCATTCACCACTTTACTTTATAATTCTGTTGATTCTGTTGATTCTCCTGATGATGTTTTGCCTTCTCCATGTGTTGAGATAAGAAGGTTAAAGGAAGGTGACATTTTTTTTCTAAAAGGTGAACAGAATGATCAAAAGTCTGTGTCATTAGTTCTCCGCATAGCTGATCAAAGTGGGCGGGCAAGAAATATCCATTTCATATTCTACATCAACAGTGATACTGCAATTTCAGTTTCAAGTGAAATGGTTGAGCAACTTGAACTGGCTGAGCACAATGTTAAATTCATAGCAGAGTTGATCGATCTATTATTGACCACATTGCTTCCTGATTGGAAACCTTGTGTACAAATTGATCATTTAGTTGCTTGTAATAGTAAATCATCTCATCCAAGTCAACAAACACGAAGCTCAAGAGATTCCATCCAAATTGTGTCTGGAGGTGGTCCAGGTCTCCCAATCTCACGTAGAAGATCAACAGATAAGGAGAACAAAGATAATGTCATTTCTGACAAGGTTTTATCTAATACAAGCATTAGTCTTCAAGGAGATGCAAAGATAGACGACTCTTGTTCTGAGACGTCACAAACTGGTGCAACATTTGACTTCAACGAAAAGCATTTTTCTACAGTTTCATTCATGTCTGCTAAATCAGGATTTACTGACTTTGACTTGCACAGAGTTAATAGTCAAACCTCACTTGTATCTGAATTCGAGGCTTCGTCTGAATATAGGAATTTTCCACGTGTGGAAAGCTATGGTACCATGAAATTCTTTAATTACCCTATGAATGCTCCCCCCTCCTTCAATGAAGCTGAGGATGAGTTGAGAATAGAGTTAGAGATGATTGAACAACAATATCAAGAAGCAATTAGAGATTTATCAAAAAGAAGATATCAGGCCATCACCGAGGCTAGGAGGAGGGTATCACATAAATTTCCAAACTTTAAATAA 1653 0.386 MNLITELFTSGNLRQYSKKHRRVDMKAVKGWARQILNGLNYLHSHNPPIMHRDLKCDNIFINGHRGEVKIGDLGLATLIKQTNARSVIGTPEFMAPELYDEHYNELVDIYSFGMCMLELVTSEYPYSECRNSAQIYKKVSSGIKPVALSKLKNQEVKSFIEKCLVPASQRLTAKELLMDNFLQVTGSLKNRRLPLPDIVLPKYGAYENRCLMSEGPASTRIRSISMDLGDATEQPFTTLLYNSVDSVDSPDDVLPSPCVEIRRLKEGDIFFLKGEQNDQKSVSLVLRIADQSGRARNIHFIFYINSDTAISVSSEMVEQLELAEHNVKFIAELIDLLLTTLLPDWKPCVQIDHLVACNSKSSHPSQQTRSSRDSIQIVSGGGPGLPISRRRSTDKENKDNVISDKVLSNTSISLQGDAKIDDSCSETSQTGATFDFNEKHFSTVSFMSAKSGFTDFDLHRVNSQTSLVSEFEASSEYRNFPRVESYGTMKFFNYPMNAPPSFNEAEDELRIELEMIEQQYQEAIRDLSKRRYQAITEARRRVSHKFPNFK 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9169g00003 550 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 2 436 - -
Vium9169g00003 550 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 282 335 IPR024678 GO:0004674|GO:0005524
Vium9169g00003 550 SMART serkin_6 1 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9169g00003 550 FunFam Serine/threonine-protein kinase WNK8 280 374 - -
Vium9169g00003 550 Coils Coil 502 526 - -
Vium9169g00003 550 MobiDBLite consensus disorder prediction 360 377 - -
Vium9169g00003 550 Pfam Protein kinase domain 2 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9169g00003 550 SUPERFAMILY Protein kinase-like (PK-like) 2 183 IPR011009 -
Vium9169g00003 550 ProSitePatterns Serine/Threonine protein kinases active-site signature. 49 61 IPR008271 GO:0004672|GO:0006468
Vium9169g00003 550 FunFam probable serine/threonine-protein kinase WNK9 8 187 - -
Vium9169g00003 550 Gene3D Transferase(Phosphotransferase) domain 1 8 188 - -
Vium9169g00003 550 MobiDBLite consensus disorder prediction 360 398 - -
Vium9169g00003 550 ProSiteProfiles Protein kinase domain profile. 1 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9169g00003 550 Gene3D - 280 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9169g00003 Vium-Chr9169 12008 14778 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9169g00003 25 394 MAP Kinase Kinase Kinase AT1G49160 62.432 3.69e-165 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vium9169g00003 Pkinase 9.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9169g00003 K08867 - gmx:121175054 791.956