Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9169g00001 ATGAGTTTGGCAGGCACAGAAAGCTCAGAGGAGGGGGCAGGCCTTCTAGAGCCTCCTGATCCCAATATTGTTGAAATCGATCCTACTAATCGCTACACTAGGTATAAAGAGGTTATCGGCCAAGGAGCTTTCAAGACTGTTTACAAGGCATTTGATGAAATTAATGGACTTGAAGTTGCATGGAGCCAAATTCATATTGATGAGGTATTACAGTCACCTGGTGGCCCAGATAGGCTGTACTCAGAAGTGCATCTCTTGAAGTCAGTTAAGCACGATAACATCTTGACTTTCCATAATTCTTGGATTGATGATAAGCACAGGACTATGAACTTGATTACTGAGTTATTCACCTCAGGGAACCTCAGACAGTACAGCAAGAAACACAGGAGGGTTGACATGAAGGCTGTTAAAGGATGGGCAAGGCAAATTTTAAATGGTTTAAATTATCTTCACAGTCACAACCCACCTATTATGCATAGGGACCTGAAGTGTGATAATATATTCATCAATGGTCACCGAGGAGAAGTTAAGATTGGAGATCTAGGGTTGGCAACTCTAATCAAACAAACCAATGCCAGGAGTGTAATTGGAACCCCGGAGTTCATGGCACCTGAACTGTATGATGAACATTATAATGAATTAGTGGACATATATTCTTTTGGGATGTGCATGCTTGAGTTGGTTACGTCTGAATATCCTTACAGTGAATGTAGAAACTCAGCTCAGATATACAAGAAAGTTTCATCTGGCATTAAGCCTGTTGCTCTTTCCAAACTCAAAAATCAAGAAGTAAAATCATTTATTGAGAAATGTCTTGTCCCAGCGTCTCAAAGACTGACAGCAAAGGAGCTTTTGATGGACAATTTTCTGCAAGTGACTGGTTCATTGAAGAATCGTCGTCTACCATTACCAGATATCGTTCTCCCTAAGTATGGAGCCTATGAAAATCGTTGTCTTATGTCAGAAGGTCCTGCTAGTACGCGTATTAGATCCATTTCAATGGATCTTGGTGATGCCACCGAGCAACCATTCACCACTTTACTTTATAATTCTGTTGATTCTGTTGATTCTCCTGATGATGTTTTGCCTTCTCCATGTGTTGAGATAAGAAGGTTAAAGGAAGGTGACATTTTTTTTCTAAAAGGTGAACAGAATGATCAAAAGTCTGTGTCATTAGTTCTCCGCATAGCTGATCAAAGTGGGCGGGCAAGAAATATCCATTTCATATTCTACATCAACAGTGATACTGCAATTTCAGTTTCAAGTGAAATGGTTGAGCAACTTGAACTGGCTGAGCACAATGTTAAATTCATAGCAGAGTTGATCGATCTATTATTGACCACATTGCTTCCTGATTGGAAACCTTGTGTACAAATTGATCATTTAGTTGCTTGTAATAGTAAATCATCTCATCCAAGTCAACAAACACGAAGCTCAAGAGATTCCATCCAAATTGTGTCTGGAGGTGGTCCAGGTCTCCCAATCTCACGTAGAAGATCAACAGATAAGGAGAACAAAGATAATGTCATTTCTGACAAGGTTTTATCTAATACAAGCATTAGTCTTCAAGGAGATGCAAAGATAGACGACTCTTGTTCTGAGACGTCACAAACTGGTGCAACATTTGACTTCAACGAAAAGCATTTTTCTACAGTTTCATTCATGTCTGCTAAATCAGGATTTACTGACTTTGACTTGCACAGAGTTAATAGTCAAACCTCACTTGTATCTGAATTCGAGGCTTCGTCTGAATATAGGAATTTTCCACGTGTGGAAAGCTATGGTACCATGAAATTCTTTAATTACCCTATGAATGCTCCCCCCTCCTTCAATGAAGCTGAGGATGAGTTGAGAATAGAGTTAGAGATGATTGAACAACAATATCAAGAAGCAATTAGAGATTTATCAAAAAGAAGATATCAGGCCATCACCGAGGCTAGGAGGAGGGTATCACATAAATTTCCAAACTTTAAATAA 1977 0.3935 MSLAGTESSEEGAGLLEPPDPNIVEIDPTNRYTRYKEVIGQGAFKTVYKAFDEINGLEVAWSQIHIDEVLQSPGGPDRLYSEVHLLKSVKHDNILTFHNSWIDDKHRTMNLITELFTSGNLRQYSKKHRRVDMKAVKGWARQILNGLNYLHSHNPPIMHRDLKCDNIFINGHRGEVKIGDLGLATLIKQTNARSVIGTPEFMAPELYDEHYNELVDIYSFGMCMLELVTSEYPYSECRNSAQIYKKVSSGIKPVALSKLKNQEVKSFIEKCLVPASQRLTAKELLMDNFLQVTGSLKNRRLPLPDIVLPKYGAYENRCLMSEGPASTRIRSISMDLGDATEQPFTTLLYNSVDSVDSPDDVLPSPCVEIRRLKEGDIFFLKGEQNDQKSVSLVLRIADQSGRARNIHFIFYINSDTAISVSSEMVEQLELAEHNVKFIAELIDLLLTTLLPDWKPCVQIDHLVACNSKSSHPSQQTRSSRDSIQIVSGGGPGLPISRRRSTDKENKDNVISDKVLSNTSISLQGDAKIDDSCSETSQTGATFDFNEKHFSTVSFMSAKSGFTDFDLHRVNSQTSLVSEFEASSEYRNFPRVESYGTMKFFNYPMNAPPSFNEAEDELRIELEMIEQQYQEAIRDLSKRRYQAITEARRRVSHKFPNFK 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9169g00001 658 Coils Coil 610 634 - -
Vium9169g00001 658 MobiDBLite consensus disorder prediction 468 485 - -
Vium9169g00001 658 Pfam Protein kinase domain 36 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9169g00001 658 MobiDBLite consensus disorder prediction 1 23 - -
Vium9169g00001 658 FunFam Serine/threonine-protein kinase WNK8 388 482 - -
Vium9169g00001 658 Gene3D - 388 476 - -
Vium9169g00001 658 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 20 544 - -
Vium9169g00001 658 ProSiteProfiles Protein kinase domain profile. 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9169g00001 658 SMART serkin_6 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9169g00001 658 SUPERFAMILY Protein kinase-like (PK-like) 35 291 IPR011009 -
Vium9169g00001 658 FunFam probable serine/threonine-protein kinase WNK9 116 295 - -
Vium9169g00001 658 MobiDBLite consensus disorder prediction 468 506 - -
Vium9169g00001 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Vium9169g00001 658 Gene3D Phosphorylase Kinase; domain 1 19 114 - -
Vium9169g00001 658 CDD STKc_WNK 31 290 - -
Vium9169g00001 658 Gene3D Transferase(Phosphotransferase) domain 1 116 296 - -
Vium9169g00001 658 FunFam Probable serine/threonine-protein kinase WNK1 18 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9169g00001 Vium-Chr9169 12008 15673 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9169g00001 133 502 MAP Kinase Kinase Kinase AT1G49160 62.432 2.15e-163 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vium9169g00001 Pkinase 3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9169g00001 K08867 - gmx:121175054 982.245