Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9168g00001 ATGGATCCGGACGCATTCACAGCCAGCCTATTCAAGTGGGACCCACGCACCGTCCTCCCCGCCGCACCGCCCTCCCGGCCCCCGCCGCCGCTCCTAGACTATGCTGTCGCCCCTCCCTCAGTCGCCCCGTCTTACCACCCCGCGAGGGCGGTGCCCCGCGAGCTCGGCGGCCTCGAGGAGCTTTTCCAGGCCTACGGCATCCGCTACTACACGGCTGCCAAGATCGCCGAGCTCGGGTTCACGGTGAGCACGCTGGTGGACATGAAAGACGAGGAGCTCGACGACATGATGAACAGCCTCTCCCAGATTTTCCGCTGGGATCTCCTCGTCGGTGAACGCTACGGCATCAAAGCCGCCGTCAGAGCCGAACGACGTCGCATCGACGACGAGGACATCAAACGCCGCACTGGCAACCTCCTCTCCACCGACACCACCACCACCACCACCAACGCCCTCGATGCCCTCTCTCAAGAAGGTTTGTCGGAGGAGCCAGTGGTGCAACGAGAGAAGGAGGCGGTGGGGAGCGGGGGAGGGAGCACGTGGGAGGTGGTTGCGTTGGAGGAGAGGAGGAAGCAGCAGAGGAGGCGGAGAACGAAGATGAAGGAGCAGGAGGAGAAGGAGGAGGTAGAAGATGAGGAGGGAGAAGAGAACGAGGAGGGTAACAACAATGGTGGAGGTTGTGAGAGGCAGAGGGAGCACCCGTTCATCGTGACGGAGCCTGGGGAGGTTGCACGTGGGAAGAAGAATGGGTTGGACTATCTGTTTCACCTCTACGAGCAGTGCCGCGAGTTCTTGATGCAGGTCCAGGCCATCGCGAAGGACCGCGGTGAAAAATGCCCCACCAAGGTGACAAATCAGGTGTTTAGGTACGCGAAGAAAGCTGGAGCGAGCTACATCAACAAGCCAAAGATGCGACACTACGTCCACTGCTATGCCTTGCACTGTCTGGACGAGGAGGTGTCGAACGAGCTTCGTAGGGCGTTCAAGGAGAGAGGAGAGAACGTTGGAGCGTGGAGACAAGCATGTTACAAGCCCCTTGTGGCCATCGCAGCGCGTCAAGGTTGGGATATTGATGCCATATTCAACGCCCACCCTCGTCTTTCCATTTGGTACGTTCCCACCAAGCTCCGTCAGCTTTGTCACGCCGAGAGAAACACAGCCGCCGCTTCCAGCTCTGTCTCTGTCGGCAGTGCTCACCTTCCCTTCTAG 1209 0.5997 MDPDAFTASLFKWDPRTVLPAAPPSRPPPPLLDYAVAPPSVAPSYHPARAVPRELGGLEELFQAYGIRYYTAAKIAELGFTVSTLVDMKDEELDDMMNSLSQIFRWDLLVGERYGIKAAVRAERRRIDDEDIKRRTGNLLSTDTTTTTTNALDALSQEGLSEEPVVQREKEAVGSGGGSTWEVVALEERRKQQRRRRTKMKEQEEKEEVEDEEGEENEEGNNNGGGCERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLMQVQAIAKDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRAFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAERNTAAASSSVSVGSAHLPF 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9168g00001 402 MobiDBLite consensus disorder prediction 188 232 - -
Vium9168g00001 402 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 223 388 IPR035209 GO:0003677
Vium9168g00001 402 Pfam Floricaula / Leafy protein SAM domain 54 130 IPR035079 -
Vium9168g00001 402 Coils Coil 183 219 - -
Vium9168g00001 402 Gene3D Protein LEAFY 225 394 IPR038276 -
Vium9168g00001 402 PANTHER PROTEIN LEAFY 1 401 IPR002910 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9168g00001 1 397 Orphan Transcription Factor Family AT5G61850 64.649 7.82e-165 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Vium9168g00001 C_LFY_FLO 7.8e-109 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9168g00001 - - gmx:100798196 633.639